Experiment: ALP with copper (II) chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3336 and Dsui_3337 overlap by 4 nucleotides Dsui_3337 and Dsui_3338 overlap by 4 nucleotides Dsui_3338 and Dsui_3339 are separated by 147 nucleotides
Dsui_3336: Dsui_3336 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, at 3,576,788 to 3,577,912
_3336
Dsui_3337: Dsui_3337 - hypothetical protein, at 3,577,909 to 3,578,505
_3337
Dsui_3338: Dsui_3338 - Zn-finger containing NTP pyrophosphohydrolase, at 3,578,502 to 3,578,954
_3338
Dsui_3339: Dsui_3339 - branched-chain amino acid aminotransferase, group I, at 3,579,102 to 3,580,022
_3339
Position (kb)
3577
3578
3579 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3577.982 kb on - strand, within Dsui_3337 at 3577.995 kb on + strand, within Dsui_3337 at 3578.063 kb on + strand, within Dsui_3337 at 3578.128 kb on + strand, within Dsui_3337 at 3578.144 kb on - strand, within Dsui_3337 at 3578.144 kb on - strand, within Dsui_3337 at 3578.210 kb on - strand, within Dsui_3337 at 3578.220 kb on - strand, within Dsui_3337 at 3578.310 kb on - strand, within Dsui_3337 at 3578.404 kb on + strand, within Dsui_3337 at 3578.404 kb on + strand, within Dsui_3337 at 3578.412 kb on - strand, within Dsui_3337 at 3578.412 kb on - strand, within Dsui_3337 at 3578.530 kb on - strand at 3578.531 kb on - strand at 3578.531 kb on - strand at 3578.563 kb on - strand, within Dsui_3338 at 3578.612 kb on + strand, within Dsui_3338 at 3578.652 kb on - strand, within Dsui_3338 at 3578.753 kb on + strand, within Dsui_3338 at 3578.787 kb on - strand, within Dsui_3338 at 3578.803 kb on - strand, within Dsui_3338 at 3578.805 kb on + strand at 3578.813 kb on - strand, within Dsui_3338 at 3578.818 kb on - strand, within Dsui_3338 at 3578.837 kb on - strand, within Dsui_3338 at 3579.004 kb on - strand at 3579.108 kb on + strand at 3579.165 kb on + strand at 3579.202 kb on - strand, within Dsui_3339 at 3579.277 kb on - strand, within Dsui_3339 at 3579.356 kb on - strand, within Dsui_3339 at 3579.357 kb on + strand, within Dsui_3339 at 3579.484 kb on - strand, within Dsui_3339
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM remove 3,577,982 - Dsui_3337 0.12 -1.1 3,577,995 + Dsui_3337 0.14 -0.1 3,578,063 + Dsui_3337 0.26 -0.1 3,578,128 + Dsui_3337 0.37 +0.9 3,578,144 - Dsui_3337 0.39 -1.1 3,578,144 - Dsui_3337 0.39 -2.2 3,578,210 - Dsui_3337 0.50 -2.9 3,578,220 - Dsui_3337 0.52 -3.7 3,578,310 - Dsui_3337 0.67 -1.2 3,578,404 + Dsui_3337 0.83 -0.1 3,578,404 + Dsui_3337 0.83 +0.9 3,578,412 - Dsui_3337 0.84 -0.7 3,578,412 - Dsui_3337 0.84 -1.9 3,578,530 - -1.5 3,578,531 - -1.2 3,578,531 - -0.7 3,578,563 - Dsui_3338 0.13 -1.3 3,578,612 + Dsui_3338 0.24 -0.1 3,578,652 - Dsui_3338 0.33 -1.3 3,578,753 + Dsui_3338 0.55 -0.1 3,578,787 - Dsui_3338 0.63 -1.3 3,578,803 - Dsui_3338 0.66 -2.4 3,578,805 + +0.9 3,578,813 - Dsui_3338 0.69 -1.2 3,578,818 - Dsui_3338 0.70 -1.6 3,578,837 - Dsui_3338 0.74 -1.3 3,579,004 - +0.9 3,579,108 + -0.3 3,579,165 + -0.4 3,579,202 - Dsui_3339 0.11 +0.9 3,579,277 - Dsui_3339 0.19 +0.9 3,579,356 - Dsui_3339 0.28 +0.9 3,579,357 + Dsui_3339 0.28 -0.0 3,579,484 - Dsui_3339 0.41 +0.9
Or see this region's nucleotide sequence