Experiment: ALP with copper (II) chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3183 and Dsui_3184 are separated by 178 nucleotides Dsui_3184 and Dsui_3185 are separated by 339 nucleotides Dsui_3185 and Dsui_3186 are separated by 77 nucleotides
Dsui_3183: Dsui_3183 - efflux transporter, outer membrane factor lipoprotein, NodT family, at 3,416,385 to 3,417,794
_3183
Dsui_3184: Dsui_3184 - hypothetical protein, at 3,417,973 to 3,418,413
_3184
Dsui_3185: Dsui_3185 - O-succinylhomoserine sulfhydrylase, at 3,418,753 to 3,419,940
_3185
Dsui_3186: Dsui_3186 - amidophosphoribosyltransferase, at 3,420,018 to 3,421,556
_3186
Position (kb)
3418
3419
3420 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3417.853 kb on - strand at 3417.853 kb on - strand at 3417.976 kb on - strand at 3418.071 kb on - strand, within Dsui_3184 at 3418.088 kb on - strand at 3418.185 kb on + strand, within Dsui_3184 at 3418.229 kb on + strand at 3418.282 kb on - strand at 3418.282 kb on - strand, within Dsui_3184 at 3418.426 kb on - strand at 3418.507 kb on - strand at 3418.625 kb on + strand at 3418.625 kb on + strand at 3418.657 kb on - strand at 3418.671 kb on - strand at 3418.751 kb on + strand at 3418.759 kb on - strand at 3420.029 kb on - strand at 3420.044 kb on + strand at 3420.067 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM remove 3,417,853 - -0.1 3,417,853 - +0.9 3,417,976 - -2.3 3,418,071 - Dsui_3184 0.22 -0.7 3,418,088 - +0.9 3,418,185 + Dsui_3184 0.48 -2.1 3,418,229 + +0.9 3,418,282 - +0.9 3,418,282 - Dsui_3184 0.70 -0.7 3,418,426 - +0.9 3,418,507 - -0.1 3,418,625 + -1.9 3,418,625 + -0.2 3,418,657 - +0.9 3,418,671 - +0.9 3,418,751 + -0.7 3,418,759 - -3.4 3,420,029 - -1.0 3,420,044 + -1.1 3,420,067 - -1.2
Or see this region's nucleotide sequence