Strain Fitness in Dechlorosoma suillum PS around Dsui_3185

Experiment: ALP with copper (II) chloride 0.6 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_3183 and Dsui_3184 are separated by 178 nucleotidesDsui_3184 and Dsui_3185 are separated by 339 nucleotidesDsui_3185 and Dsui_3186 are separated by 77 nucleotides Dsui_3183: Dsui_3183 - efflux transporter, outer membrane factor lipoprotein, NodT family, at 3,416,385 to 3,417,794 _3183 Dsui_3184: Dsui_3184 - hypothetical protein, at 3,417,973 to 3,418,413 _3184 Dsui_3185: Dsui_3185 - O-succinylhomoserine sulfhydrylase, at 3,418,753 to 3,419,940 _3185 Dsui_3186: Dsui_3186 - amidophosphoribosyltransferase, at 3,420,018 to 3,421,556 _3186 Position (kb) 3418 3419 3420Strain fitness (log2 ratio) -3 -2 -1 0 1at 3417.853 kb on - strandat 3417.853 kb on - strandat 3417.976 kb on - strandat 3418.071 kb on - strand, within Dsui_3184at 3418.088 kb on - strandat 3418.185 kb on + strand, within Dsui_3184at 3418.229 kb on + strandat 3418.282 kb on - strandat 3418.282 kb on - strand, within Dsui_3184at 3418.426 kb on - strandat 3418.507 kb on - strandat 3418.625 kb on + strandat 3418.625 kb on + strandat 3418.657 kb on - strandat 3418.671 kb on - strandat 3418.751 kb on + strandat 3418.759 kb on - strandat 3420.029 kb on - strandat 3420.044 kb on + strandat 3420.067 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM
remove
3,417,853 - -0.1
3,417,853 - +0.9
3,417,976 - -2.3
3,418,071 - Dsui_3184 0.22 -0.7
3,418,088 - +0.9
3,418,185 + Dsui_3184 0.48 -2.1
3,418,229 + +0.9
3,418,282 - +0.9
3,418,282 - Dsui_3184 0.70 -0.7
3,418,426 - +0.9
3,418,507 - -0.1
3,418,625 + -1.9
3,418,625 + -0.2
3,418,657 - +0.9
3,418,671 - +0.9
3,418,751 + -0.7
3,418,759 - -3.4
3,420,029 - -1.0
3,420,044 + -1.1
3,420,067 - -1.2

Or see this region's nucleotide sequence