Experiment: ALP with copper (II) chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3173 and Dsui_3174 are separated by 104 nucleotides Dsui_3174 and Dsui_3175 are separated by 463 nucleotides
Dsui_3173: Dsui_3173 - transcriptional regulator, at 3,402,450 to 3,403,376
_3173
Dsui_3174: Dsui_3174 - DNA/RNA helicase, superfamily II, at 3,403,481 to 3,404,902
_3174
Dsui_3175: Dsui_3175 - efflux transporter, outer membrane factor lipoprotein, NodT family, at 3,405,366 to 3,406,901
_3175
Position (kb)
3403
3404
3405 Strain fitness (log2 ratio)
-2
-1
0
1 at 3402.502 kb on + strand at 3402.502 kb on + strand at 3402.558 kb on - strand, within Dsui_3173 at 3402.575 kb on - strand, within Dsui_3173 at 3402.585 kb on - strand, within Dsui_3173 at 3402.621 kb on - strand at 3402.621 kb on - strand, within Dsui_3173 at 3402.621 kb on - strand at 3402.709 kb on + strand, within Dsui_3173 at 3402.709 kb on + strand, within Dsui_3173 at 3402.709 kb on + strand, within Dsui_3173 at 3402.833 kb on + strand, within Dsui_3173 at 3402.980 kb on + strand, within Dsui_3173 at 3403.006 kb on - strand at 3403.168 kb on + strand, within Dsui_3173 at 3403.176 kb on - strand at 3403.176 kb on - strand at 3403.183 kb on - strand at 3403.718 kb on + strand at 3403.726 kb on - strand, within Dsui_3174 at 3403.796 kb on - strand, within Dsui_3174 at 3403.961 kb on + strand, within Dsui_3174 at 3404.048 kb on - strand, within Dsui_3174 at 3404.452 kb on + strand, within Dsui_3174 at 3404.452 kb on + strand, within Dsui_3174 at 3404.452 kb on + strand at 3404.460 kb on - strand, within Dsui_3174 at 3404.475 kb on - strand, within Dsui_3174 at 3404.595 kb on - strand, within Dsui_3174 at 3404.734 kb on + strand at 3404.742 kb on - strand, within Dsui_3174 at 3404.838 kb on + strand at 3404.838 kb on + strand at 3404.838 kb on + strand at 3404.846 kb on - strand at 3404.846 kb on - strand at 3404.846 kb on - strand at 3404.846 kb on - strand at 3404.846 kb on - strand at 3404.851 kb on - strand at 3404.907 kb on - strand at 3404.922 kb on + strand at 3404.930 kb on - strand at 3404.930 kb on - strand at 3405.081 kb on - strand at 3405.220 kb on + strand at 3405.466 kb on - strand at 3405.466 kb on - strand at 3405.505 kb on + strand at 3405.658 kb on + strand, within Dsui_3175 at 3405.680 kb on + strand at 3405.778 kb on + strand, within Dsui_3175
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM remove 3,402,502 + -1.2 3,402,502 + -0.5 3,402,558 - Dsui_3173 0.12 -1.1 3,402,575 - Dsui_3173 0.13 -1.1 3,402,585 - Dsui_3173 0.15 +0.9 3,402,621 - +0.9 3,402,621 - Dsui_3173 0.18 +0.9 3,402,621 - +0.9 3,402,709 + Dsui_3173 0.28 +0.0 3,402,709 + Dsui_3173 0.28 -0.6 3,402,709 + Dsui_3173 0.28 -0.9 3,402,833 + Dsui_3173 0.41 -0.6 3,402,980 + Dsui_3173 0.57 -1.5 3,403,006 - +0.9 3,403,168 + Dsui_3173 0.77 -0.7 3,403,176 - +0.9 3,403,176 - -0.7 3,403,183 - -0.1 3,403,718 + +0.9 3,403,726 - Dsui_3174 0.17 -0.4 3,403,796 - Dsui_3174 0.22 +0.2 3,403,961 + Dsui_3174 0.34 +0.9 3,404,048 - Dsui_3174 0.40 -0.2 3,404,452 + Dsui_3174 0.68 -0.1 3,404,452 + Dsui_3174 0.68 -1.9 3,404,452 + +0.9 3,404,460 - Dsui_3174 0.69 -0.5 3,404,475 - Dsui_3174 0.70 +0.2 3,404,595 - Dsui_3174 0.78 -0.7 3,404,734 + +0.9 3,404,742 - Dsui_3174 0.89 +0.7 3,404,838 + +0.9 3,404,838 + +0.9 3,404,838 + -1.1 3,404,846 - -0.7 3,404,846 - -0.4 3,404,846 - +0.1 3,404,846 - -0.5 3,404,846 - -1.0 3,404,851 - +0.3 3,404,907 - -0.9 3,404,922 + +0.9 3,404,930 - -0.8 3,404,930 - -0.2 3,405,081 - -0.7 3,405,220 + +0.9 3,405,466 - -0.1 3,405,466 - +0.9 3,405,505 + +0.9 3,405,658 + Dsui_3175 0.19 -0.7 3,405,680 + -0.1 3,405,778 + Dsui_3175 0.27 +0.9
Or see this region's nucleotide sequence