Experiment: ALP with copper (II) chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3153 and Dsui_3154 are separated by 1 nucleotides Dsui_3154 and Dsui_3155 are separated by 72 nucleotides Dsui_3155 and Dsui_3156 are separated by 176 nucleotides
Dsui_3153: Dsui_3153 - TRAP transporter, DctM subunit, at 3,375,267 to 3,376,550
_3153
Dsui_3154: Dsui_3154 - TRAP-type C4-dicarboxylate transport system, small permease component, at 3,376,552 to 3,377,292
_3154
Dsui_3155: Dsui_3155 - tripartite ATP-independent periplasmic transporter solute receptor, DctP family, at 3,377,365 to 3,378,363
_3155
Dsui_3156: Dsui_3156 - putative permease, at 3,378,540 to 3,379,313
_3156
Position (kb)
3377
3378
3379 Strain fitness (log2 ratio)
-2
-1
0
1 at 3376.412 kb on + strand, within Dsui_3153 at 3376.461 kb on + strand at 3376.516 kb on + strand at 3376.597 kb on + strand at 3376.800 kb on + strand, within Dsui_3154 at 3377.061 kb on + strand, within Dsui_3154 at 3377.084 kb on - strand, within Dsui_3154 at 3377.129 kb on + strand, within Dsui_3154 at 3377.135 kb on - strand, within Dsui_3154 at 3377.208 kb on - strand, within Dsui_3154 at 3377.240 kb on + strand at 3377.242 kb on - strand at 3377.248 kb on - strand at 3377.251 kb on + strand at 3377.302 kb on + strand at 3377.305 kb on - strand at 3377.310 kb on - strand at 3377.329 kb on - strand at 3377.331 kb on + strand at 3377.404 kb on + strand at 3377.450 kb on - strand at 3377.468 kb on - strand, within Dsui_3155 at 3377.499 kb on + strand, within Dsui_3155 at 3377.542 kb on + strand, within Dsui_3155 at 3377.542 kb on + strand, within Dsui_3155 at 3377.774 kb on + strand, within Dsui_3155 at 3377.782 kb on - strand, within Dsui_3155 at 3377.792 kb on - strand, within Dsui_3155 at 3378.002 kb on + strand, within Dsui_3155 at 3378.038 kb on + strand, within Dsui_3155 at 3378.080 kb on + strand, within Dsui_3155 at 3378.080 kb on - strand, within Dsui_3155 at 3378.119 kb on + strand, within Dsui_3155 at 3378.126 kb on + strand, within Dsui_3155 at 3378.178 kb on + strand at 3378.392 kb on + strand at 3378.417 kb on - strand at 3378.417 kb on - strand at 3378.427 kb on - strand at 3378.806 kb on - strand, within Dsui_3156 at 3378.892 kb on + strand, within Dsui_3156 at 3378.927 kb on - strand, within Dsui_3156 at 3378.946 kb on + strand, within Dsui_3156 at 3379.059 kb on + strand, within Dsui_3156 at 3379.065 kb on - strand, within Dsui_3156 at 3379.162 kb on + strand, within Dsui_3156 at 3379.170 kb on - strand at 3379.173 kb on - strand, within Dsui_3156 at 3379.186 kb on + strand, within Dsui_3156 at 3379.270 kb on - strand at 3379.293 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM remove 3,376,412 + Dsui_3153 0.89 -0.1 3,376,461 + +0.9 3,376,516 + +0.9 3,376,597 + -1.7 3,376,800 + Dsui_3154 0.33 +0.9 3,377,061 + Dsui_3154 0.69 +0.9 3,377,084 - Dsui_3154 0.72 +0.2 3,377,129 + Dsui_3154 0.78 +0.9 3,377,135 - Dsui_3154 0.79 +0.3 3,377,208 - Dsui_3154 0.89 +0.0 3,377,240 + -1.4 3,377,242 - +0.3 3,377,248 - -0.1 3,377,251 + -0.1 3,377,302 + -1.4 3,377,305 - -0.9 3,377,310 - +0.9 3,377,329 - -0.0 3,377,331 + -1.4 3,377,404 + +0.9 3,377,450 - +0.4 3,377,468 - Dsui_3155 0.10 +1.0 3,377,499 + Dsui_3155 0.13 +0.9 3,377,542 + Dsui_3155 0.18 -2.4 3,377,542 + Dsui_3155 0.18 +0.9 3,377,774 + Dsui_3155 0.41 +0.9 3,377,782 - Dsui_3155 0.42 +1.1 3,377,792 - Dsui_3155 0.43 +0.6 3,378,002 + Dsui_3155 0.64 -0.1 3,378,038 + Dsui_3155 0.67 +0.9 3,378,080 + Dsui_3155 0.72 -0.1 3,378,080 - Dsui_3155 0.72 +0.1 3,378,119 + Dsui_3155 0.75 +0.9 3,378,126 + Dsui_3155 0.76 -0.1 3,378,178 + +0.9 3,378,392 + -0.1 3,378,417 - +0.8 3,378,417 - +0.8 3,378,427 - +0.5 3,378,806 - Dsui_3156 0.34 -0.7 3,378,892 + Dsui_3156 0.45 -1.4 3,378,927 - Dsui_3156 0.50 -0.1 3,378,946 + Dsui_3156 0.52 +0.9 3,379,059 + Dsui_3156 0.67 -0.7 3,379,065 - Dsui_3156 0.68 -0.1 3,379,162 + Dsui_3156 0.80 +0.9 3,379,170 - +0.9 3,379,173 - Dsui_3156 0.82 -0.7 3,379,186 + Dsui_3156 0.83 -1.1 3,379,270 - +0.9 3,379,293 + -1.7
Or see this region's nucleotide sequence