Strain Fitness in Dechlorosoma suillum PS around Dsui_3155

Experiment: ALP with copper (II) chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3153 and Dsui_3154 are separated by 1 nucleotidesDsui_3154 and Dsui_3155 are separated by 72 nucleotidesDsui_3155 and Dsui_3156 are separated by 176 nucleotides Dsui_3153: Dsui_3153 - TRAP transporter, DctM subunit, at 3,375,267 to 3,376,550 _3153 Dsui_3154: Dsui_3154 - TRAP-type C4-dicarboxylate transport system, small permease component, at 3,376,552 to 3,377,292 _3154 Dsui_3155: Dsui_3155 - tripartite ATP-independent periplasmic transporter solute receptor, DctP family, at 3,377,365 to 3,378,363 _3155 Dsui_3156: Dsui_3156 - putative permease, at 3,378,540 to 3,379,313 _3156 Position (kb) 3377 3378 3379Strain fitness (log2 ratio) -2 -1 0 1at 3376.412 kb on + strand, within Dsui_3153at 3376.461 kb on + strandat 3376.516 kb on + strandat 3376.597 kb on + strandat 3376.800 kb on + strand, within Dsui_3154at 3377.061 kb on + strand, within Dsui_3154at 3377.084 kb on - strand, within Dsui_3154at 3377.129 kb on + strand, within Dsui_3154at 3377.135 kb on - strand, within Dsui_3154at 3377.208 kb on - strand, within Dsui_3154at 3377.240 kb on + strandat 3377.242 kb on - strandat 3377.248 kb on - strandat 3377.251 kb on + strandat 3377.302 kb on + strandat 3377.305 kb on - strandat 3377.310 kb on - strandat 3377.329 kb on - strandat 3377.331 kb on + strandat 3377.404 kb on + strandat 3377.450 kb on - strandat 3377.468 kb on - strand, within Dsui_3155at 3377.499 kb on + strand, within Dsui_3155at 3377.542 kb on + strand, within Dsui_3155at 3377.542 kb on + strand, within Dsui_3155at 3377.774 kb on + strand, within Dsui_3155at 3377.782 kb on - strand, within Dsui_3155at 3377.792 kb on - strand, within Dsui_3155at 3378.002 kb on + strand, within Dsui_3155at 3378.038 kb on + strand, within Dsui_3155at 3378.080 kb on + strand, within Dsui_3155at 3378.080 kb on - strand, within Dsui_3155at 3378.119 kb on + strand, within Dsui_3155at 3378.126 kb on + strand, within Dsui_3155at 3378.178 kb on + strandat 3378.392 kb on + strandat 3378.417 kb on - strandat 3378.417 kb on - strandat 3378.427 kb on - strandat 3378.806 kb on - strand, within Dsui_3156at 3378.892 kb on + strand, within Dsui_3156at 3378.927 kb on - strand, within Dsui_3156at 3378.946 kb on + strand, within Dsui_3156at 3379.059 kb on + strand, within Dsui_3156at 3379.065 kb on - strand, within Dsui_3156at 3379.162 kb on + strand, within Dsui_3156at 3379.170 kb on - strandat 3379.173 kb on - strand, within Dsui_3156at 3379.186 kb on + strand, within Dsui_3156at 3379.270 kb on - strandat 3379.293 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM
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3,376,412 + Dsui_3153 0.89 -0.1
3,376,461 + +0.9
3,376,516 + +0.9
3,376,597 + -1.7
3,376,800 + Dsui_3154 0.33 +0.9
3,377,061 + Dsui_3154 0.69 +0.9
3,377,084 - Dsui_3154 0.72 +0.2
3,377,129 + Dsui_3154 0.78 +0.9
3,377,135 - Dsui_3154 0.79 +0.3
3,377,208 - Dsui_3154 0.89 +0.0
3,377,240 + -1.4
3,377,242 - +0.3
3,377,248 - -0.1
3,377,251 + -0.1
3,377,302 + -1.4
3,377,305 - -0.9
3,377,310 - +0.9
3,377,329 - -0.0
3,377,331 + -1.4
3,377,404 + +0.9
3,377,450 - +0.4
3,377,468 - Dsui_3155 0.10 +1.0
3,377,499 + Dsui_3155 0.13 +0.9
3,377,542 + Dsui_3155 0.18 -2.4
3,377,542 + Dsui_3155 0.18 +0.9
3,377,774 + Dsui_3155 0.41 +0.9
3,377,782 - Dsui_3155 0.42 +1.1
3,377,792 - Dsui_3155 0.43 +0.6
3,378,002 + Dsui_3155 0.64 -0.1
3,378,038 + Dsui_3155 0.67 +0.9
3,378,080 + Dsui_3155 0.72 -0.1
3,378,080 - Dsui_3155 0.72 +0.1
3,378,119 + Dsui_3155 0.75 +0.9
3,378,126 + Dsui_3155 0.76 -0.1
3,378,178 + +0.9
3,378,392 + -0.1
3,378,417 - +0.8
3,378,417 - +0.8
3,378,427 - +0.5
3,378,806 - Dsui_3156 0.34 -0.7
3,378,892 + Dsui_3156 0.45 -1.4
3,378,927 - Dsui_3156 0.50 -0.1
3,378,946 + Dsui_3156 0.52 +0.9
3,379,059 + Dsui_3156 0.67 -0.7
3,379,065 - Dsui_3156 0.68 -0.1
3,379,162 + Dsui_3156 0.80 +0.9
3,379,170 - +0.9
3,379,173 - Dsui_3156 0.82 -0.7
3,379,186 + Dsui_3156 0.83 -1.1
3,379,270 - +0.9
3,379,293 + -1.7

Or see this region's nucleotide sequence