Strain Fitness in Dechlorosoma suillum PS around Dsui_3135

Experiment: ALP with copper (II) chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3133 and Dsui_3134 are separated by 20 nucleotidesDsui_3134 and Dsui_3135 are separated by 12 nucleotidesDsui_3135 and Dsui_3136 are separated by 47 nucleotides Dsui_3133: Dsui_3133 - hypothetical protein, at 3,355,815 to 3,356,000 _3133 Dsui_3134: Dsui_3134 - membrane protease subunit, stomatin/prohibitin, at 3,356,021 to 3,356,899 _3134 Dsui_3135: Dsui_3135 - HflK protein, at 3,356,912 to 3,358,186 _3135 Dsui_3136: Dsui_3136 - GTP-binding protein HflX, at 3,358,234 to 3,359,421 _3136 Position (kb) 3356 3357 3358 3359Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3356.348 kb on - strand, within Dsui_3134at 3356.735 kb on - strand, within Dsui_3134at 3356.908 kb on - strandat 3357.147 kb on - strand, within Dsui_3135at 3357.422 kb on - strand, within Dsui_3135at 3358.204 kb on - strandat 3358.394 kb on + strand, within Dsui_3136at 3358.501 kb on + strandat 3358.538 kb on - strand, within Dsui_3136at 3358.592 kb on - strand, within Dsui_3136at 3358.647 kb on + strand, within Dsui_3136at 3358.812 kb on - strand, within Dsui_3136at 3358.883 kb on - strand, within Dsui_3136at 3358.915 kb on - strand, within Dsui_3136at 3358.979 kb on + strand, within Dsui_3136at 3358.990 kb on + strand, within Dsui_3136at 3359.115 kb on - strand, within Dsui_3136at 3359.119 kb on - strand, within Dsui_3136at 3359.125 kb on - strand, within Dsui_3136at 3359.151 kb on + strand, within Dsui_3136

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM
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3,356,348 - Dsui_3134 0.37 -0.1
3,356,735 - Dsui_3134 0.81 -1.1
3,356,908 - -5.2
3,357,147 - Dsui_3135 0.18 +0.9
3,357,422 - Dsui_3135 0.40 -0.1
3,358,204 - -1.2
3,358,394 + Dsui_3136 0.13 -0.7
3,358,501 + -0.7
3,358,538 - Dsui_3136 0.26 -1.6
3,358,592 - Dsui_3136 0.30 -3.3
3,358,647 + Dsui_3136 0.35 +0.9
3,358,812 - Dsui_3136 0.49 -2.0
3,358,883 - Dsui_3136 0.55 -2.4
3,358,915 - Dsui_3136 0.57 -3.4
3,358,979 + Dsui_3136 0.63 +0.9
3,358,990 + Dsui_3136 0.64 +0.9
3,359,115 - Dsui_3136 0.74 -2.6
3,359,119 - Dsui_3136 0.74 -2.7
3,359,125 - Dsui_3136 0.75 -2.9
3,359,151 + Dsui_3136 0.77 -2.6

Or see this region's nucleotide sequence