Strain Fitness in Dechlorosoma suillum PS around Dsui_3126

Experiment: ALP with copper (II) chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3125 and Dsui_3126 overlap by 4 nucleotidesDsui_3126 and Dsui_3127 are separated by 201 nucleotidesDsui_3127 and Dsui_3128 are separated by 16 nucleotides Dsui_3125: Dsui_3125 - cytochrome c, mono- and diheme variants family, at 3,346,411 to 3,348,009 _3125 Dsui_3126: Dsui_3126 - heme d1 biosynthesis radical SAM protein NirJ, at 3,348,006 to 3,349,169 _3126 Dsui_3127: Dsui_3127 - 23S RNA-specific pseudouridylate synthase, at 3,349,371 to 3,350,117 _3127 Dsui_3128: Dsui_3128 - ribonuclease R, at 3,350,134 to 3,352,620 _3128 Position (kb) 3348 3349 3350Strain fitness (log2 ratio) -3 -2 -1 0 1at 3347.108 kb on - strand, within Dsui_3125at 3347.120 kb on + strand, within Dsui_3125at 3347.140 kb on - strand, within Dsui_3125at 3347.193 kb on + strandat 3347.265 kb on + strand, within Dsui_3125at 3347.274 kb on - strand, within Dsui_3125at 3347.382 kb on + strand, within Dsui_3125at 3347.492 kb on + strand, within Dsui_3125at 3347.765 kb on + strand, within Dsui_3125at 3347.772 kb on - strand, within Dsui_3125at 3347.773 kb on - strand, within Dsui_3125at 3347.991 kb on - strandat 3348.188 kb on + strandat 3348.190 kb on - strand, within Dsui_3126at 3348.252 kb on + strand, within Dsui_3126at 3348.269 kb on + strandat 3348.317 kb on + strand, within Dsui_3126at 3348.381 kb on - strand, within Dsui_3126at 3348.400 kb on - strand, within Dsui_3126at 3348.418 kb on - strand, within Dsui_3126at 3348.461 kb on - strand, within Dsui_3126at 3348.521 kb on + strandat 3348.599 kb on + strandat 3348.604 kb on + strand, within Dsui_3126at 3348.607 kb on - strandat 3348.612 kb on - strand, within Dsui_3126at 3348.668 kb on + strand, within Dsui_3126at 3348.761 kb on + strandat 3348.769 kb on - strand, within Dsui_3126at 3348.853 kb on - strand, within Dsui_3126at 3348.918 kb on - strand, within Dsui_3126at 3348.923 kb on - strand, within Dsui_3126at 3348.969 kb on - strand, within Dsui_3126at 3348.987 kb on + strand, within Dsui_3126at 3349.054 kb on - strandat 3349.058 kb on + strandat 3349.066 kb on - strandat 3349.085 kb on - strandat 3349.177 kb on + strandat 3349.234 kb on + strandat 3349.234 kb on + strandat 3349.245 kb on - strandat 3349.252 kb on - strandat 3349.336 kb on - strandat 3349.341 kb on + strandat 3349.616 kb on + strand, within Dsui_3127at 3349.621 kb on + strand, within Dsui_3127at 3349.778 kb on - strandat 3350.016 kb on - strand, within Dsui_3127at 3350.065 kb on - strandat 3350.080 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM
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3,347,108 - Dsui_3125 0.44 -0.1
3,347,120 + Dsui_3125 0.44 -1.5
3,347,140 - Dsui_3125 0.46 +0.9
3,347,193 + +0.9
3,347,265 + Dsui_3125 0.53 -0.7
3,347,274 - Dsui_3125 0.54 -0.7
3,347,382 + Dsui_3125 0.61 -0.1
3,347,492 + Dsui_3125 0.68 +0.9
3,347,765 + Dsui_3125 0.85 -2.1
3,347,772 - Dsui_3125 0.85 -1.5
3,347,773 - Dsui_3125 0.85 -1.5
3,347,991 - -0.7
3,348,188 + -0.1
3,348,190 - Dsui_3126 0.16 -1.1
3,348,252 + Dsui_3126 0.21 -0.7
3,348,269 + -0.1
3,348,317 + Dsui_3126 0.27 -0.7
3,348,381 - Dsui_3126 0.32 -0.7
3,348,400 - Dsui_3126 0.34 +0.9
3,348,418 - Dsui_3126 0.35 -0.1
3,348,461 - Dsui_3126 0.39 -0.7
3,348,521 + +0.9
3,348,599 + +0.9
3,348,604 + Dsui_3126 0.51 -1.1
3,348,607 - +0.9
3,348,612 - Dsui_3126 0.52 -0.1
3,348,668 + Dsui_3126 0.57 -1.9
3,348,761 + +0.9
3,348,769 - Dsui_3126 0.66 +0.9
3,348,853 - Dsui_3126 0.73 -0.1
3,348,918 - Dsui_3126 0.78 -1.1
3,348,923 - Dsui_3126 0.79 -0.1
3,348,969 - Dsui_3126 0.83 -1.1
3,348,987 + Dsui_3126 0.84 -0.1
3,349,054 - -1.8
3,349,058 + -1.1
3,349,066 - -2.1
3,349,085 - -2.3
3,349,177 + +0.9
3,349,234 + -1.4
3,349,234 + -0.1
3,349,245 - +0.9
3,349,252 - -0.1
3,349,336 - -1.4
3,349,341 + -2.8
3,349,616 + Dsui_3127 0.33 -1.5
3,349,621 + Dsui_3127 0.33 -1.9
3,349,778 - -0.1
3,350,016 - Dsui_3127 0.86 -1.7
3,350,065 - -1.7
3,350,080 - +0.9

Or see this region's nucleotide sequence