Experiment: ALP with copper (II) chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3111 and Dsui_3112 are separated by 10 nucleotides Dsui_3112 and Dsui_3113 overlap by 4 nucleotides
Dsui_3111: Dsui_3111 - hypothetical protein, at 3,333,042 to 3,334,334
_3111
Dsui_3112: Dsui_3112 - hypothetical protein, at 3,334,345 to 3,334,791
_3112
Dsui_3113: Dsui_3113 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 3,334,788 to 3,337,169
_3113
Position (kb)
3334
3335 Strain fitness (log2 ratio)
-2
-1
0
1 at 3333.371 kb on + strand, within Dsui_3111 at 3333.371 kb on + strand, within Dsui_3111 at 3333.437 kb on - strand at 3333.469 kb on + strand, within Dsui_3111 at 3333.477 kb on - strand at 3333.538 kb on + strand, within Dsui_3111 at 3333.538 kb on + strand, within Dsui_3111 at 3333.541 kb on - strand, within Dsui_3111 at 3333.651 kb on + strand, within Dsui_3111 at 3333.682 kb on + strand, within Dsui_3111 at 3333.694 kb on - strand at 3333.789 kb on - strand, within Dsui_3111 at 3334.040 kb on + strand, within Dsui_3111 at 3334.067 kb on + strand, within Dsui_3111 at 3334.132 kb on + strand, within Dsui_3111 at 3334.166 kb on - strand at 3334.182 kb on - strand at 3334.231 kb on - strand at 3334.240 kb on + strand at 3334.421 kb on + strand, within Dsui_3112 at 3334.469 kb on + strand, within Dsui_3112 at 3334.514 kb on + strand, within Dsui_3112 at 3334.522 kb on - strand at 3334.580 kb on + strand, within Dsui_3112 at 3334.650 kb on - strand, within Dsui_3112 at 3334.686 kb on + strand, within Dsui_3112 at 3334.741 kb on + strand, within Dsui_3112 at 3334.752 kb on + strand at 3334.752 kb on + strand at 3334.850 kb on - strand at 3334.851 kb on - strand at 3335.200 kb on + strand, within Dsui_3113 at 3335.239 kb on + strand, within Dsui_3113 at 3335.414 kb on + strand, within Dsui_3113 at 3335.463 kb on - strand, within Dsui_3113 at 3335.586 kb on + strand, within Dsui_3113 at 3335.605 kb on + strand, within Dsui_3113 at 3335.733 kb on - strand, within Dsui_3113
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM remove 3,333,371 + Dsui_3111 0.25 -1.5 3,333,371 + Dsui_3111 0.25 -1.4 3,333,437 - -0.1 3,333,469 + Dsui_3111 0.33 -0.1 3,333,477 - -0.7 3,333,538 + Dsui_3111 0.38 -0.1 3,333,538 + Dsui_3111 0.38 -0.1 3,333,541 - Dsui_3111 0.39 -2.3 3,333,651 + Dsui_3111 0.47 -1.1 3,333,682 + Dsui_3111 0.49 +0.9 3,333,694 - -0.1 3,333,789 - Dsui_3111 0.58 -2.1 3,334,040 + Dsui_3111 0.77 -1.9 3,334,067 + Dsui_3111 0.79 +0.9 3,334,132 + Dsui_3111 0.84 -0.7 3,334,166 - +0.9 3,334,182 - +0.9 3,334,231 - -0.7 3,334,240 + -2.1 3,334,421 + Dsui_3112 0.17 -1.9 3,334,469 + Dsui_3112 0.28 -2.7 3,334,514 + Dsui_3112 0.38 -2.5 3,334,522 - -0.1 3,334,580 + Dsui_3112 0.53 -1.9 3,334,650 - Dsui_3112 0.68 -0.1 3,334,686 + Dsui_3112 0.76 -0.1 3,334,741 + Dsui_3112 0.89 -2.6 3,334,752 + +0.5 3,334,752 + -1.1 3,334,850 - +0.9 3,334,851 - -0.1 3,335,200 + Dsui_3113 0.17 -0.1 3,335,239 + Dsui_3113 0.19 +0.9 3,335,414 + Dsui_3113 0.26 -1.7 3,335,463 - Dsui_3113 0.28 +0.9 3,335,586 + Dsui_3113 0.34 -2.3 3,335,605 + Dsui_3113 0.34 -0.7 3,335,733 - Dsui_3113 0.40 -1.9
Or see this region's nucleotide sequence