Strain Fitness in Dechlorosoma suillum PS around Dsui_3112

Experiment: ALP with copper (II) chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3111 and Dsui_3112 are separated by 10 nucleotidesDsui_3112 and Dsui_3113 overlap by 4 nucleotides Dsui_3111: Dsui_3111 - hypothetical protein, at 3,333,042 to 3,334,334 _3111 Dsui_3112: Dsui_3112 - hypothetical protein, at 3,334,345 to 3,334,791 _3112 Dsui_3113: Dsui_3113 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 3,334,788 to 3,337,169 _3113 Position (kb) 3334 3335Strain fitness (log2 ratio) -2 -1 0 1at 3333.371 kb on + strand, within Dsui_3111at 3333.371 kb on + strand, within Dsui_3111at 3333.437 kb on - strandat 3333.469 kb on + strand, within Dsui_3111at 3333.477 kb on - strandat 3333.538 kb on + strand, within Dsui_3111at 3333.538 kb on + strand, within Dsui_3111at 3333.541 kb on - strand, within Dsui_3111at 3333.651 kb on + strand, within Dsui_3111at 3333.682 kb on + strand, within Dsui_3111at 3333.694 kb on - strandat 3333.789 kb on - strand, within Dsui_3111at 3334.040 kb on + strand, within Dsui_3111at 3334.067 kb on + strand, within Dsui_3111at 3334.132 kb on + strand, within Dsui_3111at 3334.166 kb on - strandat 3334.182 kb on - strandat 3334.231 kb on - strandat 3334.240 kb on + strandat 3334.421 kb on + strand, within Dsui_3112at 3334.469 kb on + strand, within Dsui_3112at 3334.514 kb on + strand, within Dsui_3112at 3334.522 kb on - strandat 3334.580 kb on + strand, within Dsui_3112at 3334.650 kb on - strand, within Dsui_3112at 3334.686 kb on + strand, within Dsui_3112at 3334.741 kb on + strand, within Dsui_3112at 3334.752 kb on + strandat 3334.752 kb on + strandat 3334.850 kb on - strandat 3334.851 kb on - strandat 3335.200 kb on + strand, within Dsui_3113at 3335.239 kb on + strand, within Dsui_3113at 3335.414 kb on + strand, within Dsui_3113at 3335.463 kb on - strand, within Dsui_3113at 3335.586 kb on + strand, within Dsui_3113at 3335.605 kb on + strand, within Dsui_3113at 3335.733 kb on - strand, within Dsui_3113

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM
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3,333,371 + Dsui_3111 0.25 -1.5
3,333,371 + Dsui_3111 0.25 -1.4
3,333,437 - -0.1
3,333,469 + Dsui_3111 0.33 -0.1
3,333,477 - -0.7
3,333,538 + Dsui_3111 0.38 -0.1
3,333,538 + Dsui_3111 0.38 -0.1
3,333,541 - Dsui_3111 0.39 -2.3
3,333,651 + Dsui_3111 0.47 -1.1
3,333,682 + Dsui_3111 0.49 +0.9
3,333,694 - -0.1
3,333,789 - Dsui_3111 0.58 -2.1
3,334,040 + Dsui_3111 0.77 -1.9
3,334,067 + Dsui_3111 0.79 +0.9
3,334,132 + Dsui_3111 0.84 -0.7
3,334,166 - +0.9
3,334,182 - +0.9
3,334,231 - -0.7
3,334,240 + -2.1
3,334,421 + Dsui_3112 0.17 -1.9
3,334,469 + Dsui_3112 0.28 -2.7
3,334,514 + Dsui_3112 0.38 -2.5
3,334,522 - -0.1
3,334,580 + Dsui_3112 0.53 -1.9
3,334,650 - Dsui_3112 0.68 -0.1
3,334,686 + Dsui_3112 0.76 -0.1
3,334,741 + Dsui_3112 0.89 -2.6
3,334,752 + +0.5
3,334,752 + -1.1
3,334,850 - +0.9
3,334,851 - -0.1
3,335,200 + Dsui_3113 0.17 -0.1
3,335,239 + Dsui_3113 0.19 +0.9
3,335,414 + Dsui_3113 0.26 -1.7
3,335,463 - Dsui_3113 0.28 +0.9
3,335,586 + Dsui_3113 0.34 -2.3
3,335,605 + Dsui_3113 0.34 -0.7
3,335,733 - Dsui_3113 0.40 -1.9

Or see this region's nucleotide sequence