Strain Fitness in Dechlorosoma suillum PS around Dsui_3091

Experiment: ALP with copper (II) chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3089 and Dsui_3090 are separated by 286 nucleotidesDsui_3090 and Dsui_3091 are separated by 9 nucleotidesDsui_3091 and Dsui_3092 are separated by 122 nucleotides Dsui_3089: Dsui_3089 - UDP-2,3-diacylglucosamine hydrolase, at 3,307,447 to 3,308,205 _3089 Dsui_3090: Dsui_3090 - hypothetical protein, at 3,308,492 to 3,308,770 _3090 Dsui_3091: Dsui_3091 - integral membrane protein, TerC family, at 3,308,780 to 3,309,745 _3091 Dsui_3092: Dsui_3092 - ATP-dependent DNA helicase RecQ, at 3,309,868 to 3,311,706 _3092 Position (kb) 3308 3309 3310Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 3308.233 kb on + strandat 3308.247 kb on + strandat 3308.249 kb on - strandat 3308.297 kb on + strandat 3308.459 kb on + strandat 3308.467 kb on - strandat 3308.587 kb on + strand, within Dsui_3090at 3308.620 kb on + strand, within Dsui_3090at 3308.628 kb on - strandat 3308.662 kb on - strandat 3308.854 kb on - strandat 3308.857 kb on - strandat 3308.866 kb on + strandat 3308.903 kb on + strand, within Dsui_3091at 3308.903 kb on + strand, within Dsui_3091at 3308.911 kb on - strandat 3308.925 kb on + strand, within Dsui_3091at 3308.931 kb on + strand, within Dsui_3091at 3309.061 kb on + strand, within Dsui_3091at 3309.115 kb on + strand, within Dsui_3091at 3309.147 kb on + strand, within Dsui_3091at 3309.212 kb on - strandat 3309.235 kb on + strand, within Dsui_3091at 3309.489 kb on - strandat 3309.538 kb on - strand, within Dsui_3091at 3309.592 kb on - strand, within Dsui_3091at 3309.612 kb on + strand, within Dsui_3091at 3309.823 kb on + strandat 3310.041 kb on + strandat 3310.130 kb on - strand, within Dsui_3092at 3310.162 kb on + strand, within Dsui_3092at 3310.504 kb on + strand, within Dsui_3092at 3310.535 kb on - strand, within Dsui_3092at 3310.542 kb on - strand, within Dsui_3092at 3310.574 kb on - strand, within Dsui_3092at 3310.702 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM
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3,308,233 + +0.9
3,308,247 + -0.3
3,308,249 - -2.1
3,308,297 + +0.5
3,308,459 + -1.5
3,308,467 - -0.7
3,308,587 + Dsui_3090 0.34 +0.6
3,308,620 + Dsui_3090 0.46 +2.0
3,308,628 - +0.9
3,308,662 - -0.1
3,308,854 - +0.9
3,308,857 - -0.7
3,308,866 + +4.0
3,308,903 + Dsui_3091 0.13 +5.3
3,308,903 + Dsui_3091 0.13 +4.0
3,308,911 - -0.7
3,308,925 + Dsui_3091 0.15 +3.0
3,308,931 + Dsui_3091 0.16 +3.7
3,309,061 + Dsui_3091 0.29 +3.7
3,309,115 + Dsui_3091 0.35 +4.5
3,309,147 + Dsui_3091 0.38 +6.2
3,309,212 - +0.9
3,309,235 + Dsui_3091 0.47 +4.5
3,309,489 - +0.9
3,309,538 - Dsui_3091 0.78 +4.6
3,309,592 - Dsui_3091 0.84 +0.9
3,309,612 + Dsui_3091 0.86 +4.2
3,309,823 + +0.9
3,310,041 + -2.1
3,310,130 - Dsui_3092 0.14 -0.1
3,310,162 + Dsui_3092 0.16 -1.7
3,310,504 + Dsui_3092 0.35 -2.1
3,310,535 - Dsui_3092 0.36 +0.9
3,310,542 - Dsui_3092 0.37 -0.7
3,310,574 - Dsui_3092 0.38 -2.1
3,310,702 - +0.9

Or see this region's nucleotide sequence