Strain Fitness in Dechlorosoma suillum PS around Dsui_3076

Experiment: ALP with copper (II) chloride 0.6 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_3075 and Dsui_3076 are separated by 61 nucleotidesDsui_3076 and Dsui_3077 are separated by 65 nucleotides Dsui_3075: Dsui_3075 - ferrochelatase, at 3,290,764 to 3,291,867 _3075 Dsui_3076: Dsui_3076 - thioredoxin, at 3,291,929 to 3,292,372 _3076 Dsui_3077: Dsui_3077 - hypothetical protein, at 3,292,438 to 3,293,505 _3077 Position (kb) 3291 3292 3293Strain fitness (log2 ratio) -3 -2 -1 0 1at 3292.035 kb on - strand, within Dsui_3076at 3292.042 kb on + strand, within Dsui_3076at 3292.049 kb on + strand, within Dsui_3076at 3292.050 kb on - strand, within Dsui_3076at 3292.076 kb on + strand, within Dsui_3076at 3292.088 kb on + strand, within Dsui_3076at 3292.237 kb on + strand, within Dsui_3076at 3292.245 kb on - strand, within Dsui_3076at 3292.424 kb on + strandat 3292.432 kb on - strandat 3292.513 kb on - strandat 3292.682 kb on + strand, within Dsui_3077at 3292.688 kb on + strand, within Dsui_3077at 3292.690 kb on - strandat 3292.844 kb on + strand, within Dsui_3077at 3292.861 kb on + strand, within Dsui_3077at 3292.895 kb on + strandat 3292.913 kb on - strandat 3292.946 kb on + strand, within Dsui_3077at 3293.027 kb on + strandat 3293.107 kb on + strand, within Dsui_3077at 3293.149 kb on - strand, within Dsui_3077at 3293.292 kb on + strand, within Dsui_3077at 3293.321 kb on + strand, within Dsui_3077at 3293.346 kb on + strand, within Dsui_3077

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM
remove
3,292,035 - Dsui_3076 0.24 -0.7
3,292,042 + Dsui_3076 0.25 -2.7
3,292,049 + Dsui_3076 0.27 -2.3
3,292,050 - Dsui_3076 0.27 +0.8
3,292,076 + Dsui_3076 0.33 -2.0
3,292,088 + Dsui_3076 0.36 -2.3
3,292,237 + Dsui_3076 0.69 -3.5
3,292,245 - Dsui_3076 0.71 +0.8
3,292,424 + -0.7
3,292,432 - +0.8
3,292,513 - -1.2
3,292,682 + Dsui_3077 0.23 -0.2
3,292,688 + Dsui_3077 0.23 -0.2
3,292,690 - +0.8
3,292,844 + Dsui_3077 0.38 -0.7
3,292,861 + Dsui_3077 0.40 -0.7
3,292,895 + -0.2
3,292,913 - +0.8
3,292,946 + Dsui_3077 0.48 -1.2
3,293,027 + +0.8
3,293,107 + Dsui_3077 0.63 +0.8
3,293,149 - Dsui_3077 0.67 -0.7
3,293,292 + Dsui_3077 0.80 -2.2
3,293,321 + Dsui_3077 0.83 -1.5
3,293,346 + Dsui_3077 0.85 -0.7

Or see this region's nucleotide sequence