Experiment: ALP with copper (II) chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3014 and Dsui_3015 overlap by 4 nucleotides Dsui_3015 and Dsui_3016 are separated by 59 nucleotides Dsui_3016 and Dsui_3017 are separated by 159 nucleotides Dsui_3017 and Dsui_3018 are separated by 36 nucleotides
Dsui_3014: Dsui_3014 - outer membrane protein/peptidoglycan-associated (lipo)protein, at 3,229,305 to 3,230,024
_3014
Dsui_3015: Dsui_3015 - hypothetical protein, at 3,230,021 to 3,230,548
_3015
Dsui_3016: Dsui_3016 - hypothetical protein, at 3,230,608 to 3,230,928
_3016
Dsui_3017: Dsui_3017 - uncharacterized conserved small protein containing a coiled-coil domain, at 3,231,088 to 3,231,300
_3017
Dsui_3018: Dsui_3018 - OAH/OAS sulfhydrylase, at 3,231,337 to 3,232,638
_3018
Position (kb)
3230
3231 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3229.710 kb on + strand, within Dsui_3014 at 3229.802 kb on - strand at 3229.862 kb on + strand at 3229.870 kb on - strand at 3229.969 kb on - strand at 3229.989 kb on + strand at 3229.990 kb on - strand at 3230.050 kb on - strand at 3230.262 kb on - strand at 3230.266 kb on + strand at 3230.280 kb on - strand at 3230.400 kb on - strand at 3230.510 kb on - strand at 3230.664 kb on - strand, within Dsui_3016 at 3230.664 kb on - strand, within Dsui_3016 at 3230.670 kb on - strand, within Dsui_3016 at 3230.759 kb on - strand, within Dsui_3016 at 3230.769 kb on - strand, within Dsui_3016 at 3230.872 kb on - strand, within Dsui_3016 at 3230.952 kb on - strand at 3230.958 kb on + strand at 3230.966 kb on - strand at 3230.971 kb on - strand at 3230.971 kb on - strand at 3231.076 kb on + strand at 3231.104 kb on - strand at 3231.204 kb on + strand, within Dsui_3017 at 3231.368 kb on + strand at 3231.432 kb on + strand at 3231.468 kb on + strand, within Dsui_3018 at 3231.572 kb on + strand, within Dsui_3018 at 3231.698 kb on + strand, within Dsui_3018 at 3231.743 kb on + strand, within Dsui_3018 at 3231.805 kb on + strand, within Dsui_3018 at 3231.823 kb on - strand, within Dsui_3018 at 3231.905 kb on + strand, within Dsui_3018 at 3231.908 kb on - strand at 3231.913 kb on - strand, within Dsui_3018 at 3231.913 kb on - strand, within Dsui_3018 at 3231.913 kb on - strand at 3231.915 kb on + strand, within Dsui_3018
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM remove 3,229,710 + Dsui_3014 0.56 -1.7 3,229,802 - -0.2 3,229,862 + -0.2 3,229,870 - +0.8 3,229,969 - -0.2 3,229,989 + -1.8 3,229,990 - +0.8 3,230,050 - -1.5 3,230,262 - +0.8 3,230,266 + -0.7 3,230,280 - -0.7 3,230,400 - -0.2 3,230,510 - -1.7 3,230,664 - Dsui_3016 0.17 -0.6 3,230,664 - Dsui_3016 0.17 +0.2 3,230,670 - Dsui_3016 0.19 +1.5 3,230,759 - Dsui_3016 0.47 +0.9 3,230,769 - Dsui_3016 0.50 +1.0 3,230,872 - Dsui_3016 0.82 +0.7 3,230,952 - -1.4 3,230,958 + +0.8 3,230,966 - -0.3 3,230,971 - -1.2 3,230,971 - -0.8 3,231,076 + -1.8 3,231,104 - -0.7 3,231,204 + Dsui_3017 0.54 -2.4 3,231,368 + -3.3 3,231,432 + -3.8 3,231,468 + Dsui_3018 0.10 -1.8 3,231,572 + Dsui_3018 0.18 -1.9 3,231,698 + Dsui_3018 0.28 -0.7 3,231,743 + Dsui_3018 0.31 -1.3 3,231,805 + Dsui_3018 0.36 -1.0 3,231,823 - Dsui_3018 0.37 -0.7 3,231,905 + Dsui_3018 0.44 -2.6 3,231,908 - +0.8 3,231,913 - Dsui_3018 0.44 +0.8 3,231,913 - Dsui_3018 0.44 -0.7 3,231,913 - +0.8 3,231,915 + Dsui_3018 0.44 -1.0
Or see this region's nucleotide sequence