Strain Fitness in Dechlorosoma suillum PS around Dsui_3016

Experiment: ALP with copper (II) chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3014 and Dsui_3015 overlap by 4 nucleotidesDsui_3015 and Dsui_3016 are separated by 59 nucleotidesDsui_3016 and Dsui_3017 are separated by 159 nucleotidesDsui_3017 and Dsui_3018 are separated by 36 nucleotides Dsui_3014: Dsui_3014 - outer membrane protein/peptidoglycan-associated (lipo)protein, at 3,229,305 to 3,230,024 _3014 Dsui_3015: Dsui_3015 - hypothetical protein, at 3,230,021 to 3,230,548 _3015 Dsui_3016: Dsui_3016 - hypothetical protein, at 3,230,608 to 3,230,928 _3016 Dsui_3017: Dsui_3017 - uncharacterized conserved small protein containing a coiled-coil domain, at 3,231,088 to 3,231,300 _3017 Dsui_3018: Dsui_3018 - OAH/OAS sulfhydrylase, at 3,231,337 to 3,232,638 _3018 Position (kb) 3230 3231Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3229.710 kb on + strand, within Dsui_3014at 3229.802 kb on - strandat 3229.862 kb on + strandat 3229.870 kb on - strandat 3229.969 kb on - strandat 3229.989 kb on + strandat 3229.990 kb on - strandat 3230.050 kb on - strandat 3230.262 kb on - strandat 3230.266 kb on + strandat 3230.280 kb on - strandat 3230.400 kb on - strandat 3230.510 kb on - strandat 3230.664 kb on - strand, within Dsui_3016at 3230.664 kb on - strand, within Dsui_3016at 3230.670 kb on - strand, within Dsui_3016at 3230.759 kb on - strand, within Dsui_3016at 3230.769 kb on - strand, within Dsui_3016at 3230.872 kb on - strand, within Dsui_3016at 3230.952 kb on - strandat 3230.958 kb on + strandat 3230.966 kb on - strandat 3230.971 kb on - strandat 3230.971 kb on - strandat 3231.076 kb on + strandat 3231.104 kb on - strandat 3231.204 kb on + strand, within Dsui_3017at 3231.368 kb on + strandat 3231.432 kb on + strandat 3231.468 kb on + strand, within Dsui_3018at 3231.572 kb on + strand, within Dsui_3018at 3231.698 kb on + strand, within Dsui_3018at 3231.743 kb on + strand, within Dsui_3018at 3231.805 kb on + strand, within Dsui_3018at 3231.823 kb on - strand, within Dsui_3018at 3231.905 kb on + strand, within Dsui_3018at 3231.908 kb on - strandat 3231.913 kb on - strand, within Dsui_3018at 3231.913 kb on - strand, within Dsui_3018at 3231.913 kb on - strandat 3231.915 kb on + strand, within Dsui_3018

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM
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3,229,710 + Dsui_3014 0.56 -1.7
3,229,802 - -0.2
3,229,862 + -0.2
3,229,870 - +0.8
3,229,969 - -0.2
3,229,989 + -1.8
3,229,990 - +0.8
3,230,050 - -1.5
3,230,262 - +0.8
3,230,266 + -0.7
3,230,280 - -0.7
3,230,400 - -0.2
3,230,510 - -1.7
3,230,664 - Dsui_3016 0.17 -0.6
3,230,664 - Dsui_3016 0.17 +0.2
3,230,670 - Dsui_3016 0.19 +1.5
3,230,759 - Dsui_3016 0.47 +0.9
3,230,769 - Dsui_3016 0.50 +1.0
3,230,872 - Dsui_3016 0.82 +0.7
3,230,952 - -1.4
3,230,958 + +0.8
3,230,966 - -0.3
3,230,971 - -1.2
3,230,971 - -0.8
3,231,076 + -1.8
3,231,104 - -0.7
3,231,204 + Dsui_3017 0.54 -2.4
3,231,368 + -3.3
3,231,432 + -3.8
3,231,468 + Dsui_3018 0.10 -1.8
3,231,572 + Dsui_3018 0.18 -1.9
3,231,698 + Dsui_3018 0.28 -0.7
3,231,743 + Dsui_3018 0.31 -1.3
3,231,805 + Dsui_3018 0.36 -1.0
3,231,823 - Dsui_3018 0.37 -0.7
3,231,905 + Dsui_3018 0.44 -2.6
3,231,908 - +0.8
3,231,913 - Dsui_3018 0.44 +0.8
3,231,913 - Dsui_3018 0.44 -0.7
3,231,913 - +0.8
3,231,915 + Dsui_3018 0.44 -1.0

Or see this region's nucleotide sequence