Strain Fitness in Dechlorosoma suillum PS around Dsui_2913

Experiment: ALP with copper (II) chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2912 and Dsui_2913 are separated by 92 nucleotidesDsui_2913 and Dsui_2914 are separated by 29 nucleotidesDsui_2914 and Dsui_2915 are separated by 133 nucleotides Dsui_2912: Dsui_2912 - putative xylanase/chitin deacetylase, at 3,114,951 to 3,115,859 _2912 Dsui_2913: Dsui_2913 - dihydroxynaphthoate synthase, at 3,115,952 to 3,116,782 _2913 Dsui_2914: Dsui_2914 - cytochrome b, at 3,116,812 to 3,117,429 _2914 Dsui_2915: Dsui_2915 - o-succinylbenzoic acid synthetase, at 3,117,563 to 3,118,627 _2915 Position (kb) 3115 3116 3117Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3114.961 kb on - strandat 3115.066 kb on + strand, within Dsui_2912at 3115.140 kb on + strand, within Dsui_2912at 3115.164 kb on + strand, within Dsui_2912at 3115.169 kb on + strand, within Dsui_2912at 3115.177 kb on - strandat 3115.177 kb on - strand, within Dsui_2912at 3115.177 kb on - strand, within Dsui_2912at 3115.298 kb on + strand, within Dsui_2912at 3115.302 kb on - strandat 3115.451 kb on - strand, within Dsui_2912at 3115.498 kb on + strand, within Dsui_2912at 3115.666 kb on + strand, within Dsui_2912at 3115.803 kb on + strandat 3115.959 kb on + strandat 3115.977 kb on - strandat 3116.040 kb on - strand, within Dsui_2913at 3116.184 kb on + strand, within Dsui_2913at 3116.278 kb on + strand, within Dsui_2913at 3116.335 kb on + strand, within Dsui_2913at 3116.399 kb on - strandat 3116.509 kb on - strandat 3116.512 kb on + strand, within Dsui_2913at 3116.682 kb on + strand, within Dsui_2913at 3116.832 kb on + strandat 3116.883 kb on - strand, within Dsui_2914at 3116.950 kb on - strandat 3116.955 kb on - strandat 3116.984 kb on - strand, within Dsui_2914at 3116.997 kb on + strandat 3117.098 kb on + strandat 3117.162 kb on + strandat 3117.492 kb on - strandat 3117.555 kb on - strandat 3117.596 kb on + strandat 3117.665 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM
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3,114,961 - +0.8
3,115,066 + Dsui_2912 0.13 -3.0
3,115,140 + Dsui_2912 0.21 -0.7
3,115,164 + Dsui_2912 0.23 -2.9
3,115,169 + Dsui_2912 0.24 -1.7
3,115,177 - -0.2
3,115,177 - Dsui_2912 0.25 +0.8
3,115,177 - Dsui_2912 0.25 -0.8
3,115,298 + Dsui_2912 0.38 -3.8
3,115,302 - +0.8
3,115,451 - Dsui_2912 0.55 -0.8
3,115,498 + Dsui_2912 0.60 -0.9
3,115,666 + Dsui_2912 0.79 -0.8
3,115,803 + -1.3
3,115,959 + -1.5
3,115,977 - -2.0
3,116,040 - Dsui_2913 0.11 -0.8
3,116,184 + Dsui_2913 0.28 -3.8
3,116,278 + Dsui_2913 0.39 -2.4
3,116,335 + Dsui_2913 0.46 -2.8
3,116,399 - +0.8
3,116,509 - +0.8
3,116,512 + Dsui_2913 0.67 -2.2
3,116,682 + Dsui_2913 0.88 -0.7
3,116,832 + +0.8
3,116,883 - Dsui_2914 0.11 -1.5
3,116,950 - +0.8
3,116,955 - +0.8
3,116,984 - Dsui_2914 0.28 +0.8
3,116,997 + +0.8
3,117,098 + -0.2
3,117,162 + +0.8
3,117,492 - -0.2
3,117,555 - +0.8
3,117,596 + -0.2
3,117,665 - -0.8

Or see this region's nucleotide sequence