Strain Fitness in Dechlorosoma suillum PS around Dsui_2907

Experiment: ALP with copper (II) chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2905 and Dsui_2906 are separated by 64 nucleotidesDsui_2906 and Dsui_2907 are separated by 252 nucleotidesDsui_2907 and Dsui_2908 are separated by 55 nucleotides Dsui_2905: Dsui_2905 - flagellin/flagellar hook associated protein, at 3,108,210 to 3,109,388 _2905 Dsui_2906: Dsui_2906 - Uncharacterized conserved protein (DUF2249), at 3,109,453 to 3,109,710 _2906 Dsui_2907: Dsui_2907 - homoserine dehydrogenase, at 3,109,963 to 3,111,273 _2907 Dsui_2908: Dsui_2908 - aspartate/tyrosine/aromatic aminotransferase, at 3,111,329 to 3,112,555 _2908 Position (kb) 3109 3110 3111 3112Strain fitness (log2 ratio) -2 -1 0 1at 3109.020 kb on + strand, within Dsui_2905at 3109.075 kb on - strand, within Dsui_2905at 3109.185 kb on + strand, within Dsui_2905at 3109.185 kb on + strandat 3109.193 kb on - strand, within Dsui_2905at 3109.226 kb on - strand, within Dsui_2905at 3109.226 kb on - strand, within Dsui_2905at 3109.248 kb on + strand, within Dsui_2905at 3109.346 kb on + strandat 3109.356 kb on + strandat 3109.413 kb on - strandat 3109.450 kb on + strandat 3109.461 kb on + strandat 3109.678 kb on + strand, within Dsui_2906at 3109.713 kb on - strandat 3109.713 kb on - strandat 3109.768 kb on - strandat 3109.781 kb on + strandat 3109.798 kb on + strandat 3109.799 kb on - strandat 3109.830 kb on - strandat 3109.892 kb on - strandat 3109.940 kb on + strandat 3111.289 kb on - strandat 3111.335 kb on + strandat 3111.395 kb on - strandat 3111.439 kb on - strandat 3111.756 kb on + strandat 3111.931 kb on - strand, within Dsui_2908at 3112.166 kb on - strand, within Dsui_2908at 3112.211 kb on - strand, within Dsui_2908at 3112.256 kb on - strand, within Dsui_2908

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM
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3,109,020 + Dsui_2905 0.69 +0.8
3,109,075 - Dsui_2905 0.73 -0.2
3,109,185 + Dsui_2905 0.83 -0.8
3,109,185 + +0.8
3,109,193 - Dsui_2905 0.83 +0.8
3,109,226 - Dsui_2905 0.86 -0.8
3,109,226 - Dsui_2905 0.86 +0.8
3,109,248 + Dsui_2905 0.88 -1.5
3,109,346 + +0.8
3,109,356 + -0.2
3,109,413 - -0.2
3,109,450 + -0.8
3,109,461 + -0.2
3,109,678 + Dsui_2906 0.87 +0.8
3,109,713 - +0.8
3,109,713 - -1.2
3,109,768 - -0.8
3,109,781 + -0.2
3,109,798 + -0.2
3,109,799 - -0.2
3,109,830 - +0.8
3,109,892 - -1.3
3,109,940 + +0.8
3,111,289 - -1.3
3,111,335 + +0.8
3,111,395 - -1.7
3,111,439 - -1.8
3,111,756 + +0.8
3,111,931 - Dsui_2908 0.49 -2.3
3,112,166 - Dsui_2908 0.68 -1.4
3,112,211 - Dsui_2908 0.72 -1.6
3,112,256 - Dsui_2908 0.76 -1.1

Or see this region's nucleotide sequence