Experiment: ALP with copper (II) chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2905 and Dsui_2906 are separated by 64 nucleotides Dsui_2906 and Dsui_2907 are separated by 252 nucleotides Dsui_2907 and Dsui_2908 are separated by 55 nucleotides
Dsui_2905: Dsui_2905 - flagellin/flagellar hook associated protein, at 3,108,210 to 3,109,388
_2905
Dsui_2906: Dsui_2906 - Uncharacterized conserved protein (DUF2249), at 3,109,453 to 3,109,710
_2906
Dsui_2907: Dsui_2907 - homoserine dehydrogenase, at 3,109,963 to 3,111,273
_2907
Dsui_2908: Dsui_2908 - aspartate/tyrosine/aromatic aminotransferase, at 3,111,329 to 3,112,555
_2908
Position (kb)
3109
3110
3111
3112 Strain fitness (log2 ratio)
-2
-1
0
1 at 3109.020 kb on + strand, within Dsui_2905 at 3109.075 kb on - strand, within Dsui_2905 at 3109.185 kb on + strand, within Dsui_2905 at 3109.185 kb on + strand at 3109.193 kb on - strand, within Dsui_2905 at 3109.226 kb on - strand, within Dsui_2905 at 3109.226 kb on - strand, within Dsui_2905 at 3109.248 kb on + strand, within Dsui_2905 at 3109.346 kb on + strand at 3109.356 kb on + strand at 3109.413 kb on - strand at 3109.450 kb on + strand at 3109.461 kb on + strand at 3109.678 kb on + strand, within Dsui_2906 at 3109.713 kb on - strand at 3109.713 kb on - strand at 3109.768 kb on - strand at 3109.781 kb on + strand at 3109.798 kb on + strand at 3109.799 kb on - strand at 3109.830 kb on - strand at 3109.892 kb on - strand at 3109.940 kb on + strand at 3111.289 kb on - strand at 3111.335 kb on + strand at 3111.395 kb on - strand at 3111.439 kb on - strand at 3111.756 kb on + strand at 3111.931 kb on - strand, within Dsui_2908 at 3112.166 kb on - strand, within Dsui_2908 at 3112.211 kb on - strand, within Dsui_2908 at 3112.256 kb on - strand, within Dsui_2908
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM remove 3,109,020 + Dsui_2905 0.69 +0.8 3,109,075 - Dsui_2905 0.73 -0.2 3,109,185 + Dsui_2905 0.83 -0.8 3,109,185 + +0.8 3,109,193 - Dsui_2905 0.83 +0.8 3,109,226 - Dsui_2905 0.86 -0.8 3,109,226 - Dsui_2905 0.86 +0.8 3,109,248 + Dsui_2905 0.88 -1.5 3,109,346 + +0.8 3,109,356 + -0.2 3,109,413 - -0.2 3,109,450 + -0.8 3,109,461 + -0.2 3,109,678 + Dsui_2906 0.87 +0.8 3,109,713 - +0.8 3,109,713 - -1.2 3,109,768 - -0.8 3,109,781 + -0.2 3,109,798 + -0.2 3,109,799 - -0.2 3,109,830 - +0.8 3,109,892 - -1.3 3,109,940 + +0.8 3,111,289 - -1.3 3,111,335 + +0.8 3,111,395 - -1.7 3,111,439 - -1.8 3,111,756 + +0.8 3,111,931 - Dsui_2908 0.49 -2.3 3,112,166 - Dsui_2908 0.68 -1.4 3,112,211 - Dsui_2908 0.72 -1.6 3,112,256 - Dsui_2908 0.76 -1.1
Or see this region's nucleotide sequence