Strain Fitness in Dechlorosoma suillum PS around Dsui_2879

Experiment: ALP with copper (II) chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2878 and Dsui_2879 are separated by 318 nucleotidesDsui_2879 and Dsui_2880 are separated by 231 nucleotides Dsui_2878: Dsui_2878 - ABC-type antimicrobial peptide transport system, permease component, at 3,072,470 to 3,073,690 _2878 Dsui_2879: Dsui_2879 - methyl-accepting chemotaxis protein, at 3,074,009 to 3,075,505 _2879 Dsui_2880: Dsui_2880 - adenosylmethionine-8-amino-7-oxononanoate transaminase, at 3,075,737 to 3,077,080 _2880 Position (kb) 3074 3075 3076Strain fitness (log2 ratio) -2 -1 0 1at 3073.085 kb on + strand, within Dsui_2878at 3073.228 kb on - strand, within Dsui_2878at 3073.417 kb on + strand, within Dsui_2878at 3073.514 kb on - strand, within Dsui_2878at 3073.715 kb on - strandat 3073.716 kb on + strandat 3073.729 kb on + strandat 3073.764 kb on + strandat 3073.805 kb on - strandat 3073.821 kb on + strandat 3073.829 kb on - strandat 3074.155 kb on - strandat 3074.588 kb on + strand, within Dsui_2879at 3074.685 kb on + strandat 3074.734 kb on + strand, within Dsui_2879at 3074.882 kb on - strand, within Dsui_2879at 3074.917 kb on - strand, within Dsui_2879at 3075.027 kb on + strandat 3075.048 kb on + strand, within Dsui_2879at 3075.062 kb on - strand, within Dsui_2879at 3075.149 kb on - strand, within Dsui_2879at 3075.149 kb on - strand, within Dsui_2879at 3075.305 kb on - strand, within Dsui_2879at 3075.399 kb on - strandat 3075.470 kb on - strandat 3075.526 kb on + strandat 3075.526 kb on + strandat 3075.528 kb on + strandat 3075.536 kb on - strandat 3075.656 kb on + strandat 3075.669 kb on + strandat 3075.687 kb on - strandat 3075.701 kb on + strandat 3075.720 kb on + strandat 3075.720 kb on - strandat 3075.733 kb on + strandat 3075.842 kb on + strandat 3075.858 kb on + strandat 3075.978 kb on - strand, within Dsui_2880at 3076.112 kb on + strand, within Dsui_2880at 3076.205 kb on - strandat 3076.245 kb on - strand, within Dsui_2880at 3076.264 kb on - strandat 3076.264 kb on - strand, within Dsui_2880at 3076.429 kb on + strand, within Dsui_2880at 3076.455 kb on + strand, within Dsui_2880

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM
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3,073,085 + Dsui_2878 0.50 -0.5
3,073,228 - Dsui_2878 0.62 -1.2
3,073,417 + Dsui_2878 0.78 +0.8
3,073,514 - Dsui_2878 0.86 -0.2
3,073,715 - -1.2
3,073,716 + -2.2
3,073,729 + -0.2
3,073,764 + +0.8
3,073,805 - +0.8
3,073,821 + -0.8
3,073,829 - -0.8
3,074,155 - -0.5
3,074,588 + Dsui_2879 0.39 -0.2
3,074,685 + -0.2
3,074,734 + Dsui_2879 0.48 +0.8
3,074,882 - Dsui_2879 0.58 -1.5
3,074,917 - Dsui_2879 0.61 -0.8
3,075,027 + -0.2
3,075,048 + Dsui_2879 0.69 -1.5
3,075,062 - Dsui_2879 0.70 -0.8
3,075,149 - Dsui_2879 0.76 -1.0
3,075,149 - Dsui_2879 0.76 -1.0
3,075,305 - Dsui_2879 0.87 -1.5
3,075,399 - -0.8
3,075,470 - -1.3
3,075,526 + +0.8
3,075,526 + +0.8
3,075,528 + +0.8
3,075,536 - -1.3
3,075,656 + -0.6
3,075,669 + -1.2
3,075,687 - +0.8
3,075,701 + -1.2
3,075,720 + -1.3
3,075,720 - -0.2
3,075,733 + -1.0
3,075,842 + -1.1
3,075,858 + -2.1
3,075,978 - Dsui_2880 0.18 +0.8
3,076,112 + Dsui_2880 0.28 -0.5
3,076,205 - +0.8
3,076,245 - Dsui_2880 0.38 +0.8
3,076,264 - +0.8
3,076,264 - Dsui_2880 0.39 -1.2
3,076,429 + Dsui_2880 0.51 -2.4
3,076,455 + Dsui_2880 0.53 -1.3

Or see this region's nucleotide sequence