Experiment: ALP with copper (II) chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2831 and Dsui_2832 are separated by 501 nucleotides Dsui_2832 and Dsui_2833 overlap by 25 nucleotides Dsui_2833 and Dsui_2834 are separated by 136 nucleotides Dsui_2834 and Dsui_2835 are separated by 48 nucleotides
Dsui_2831: Dsui_2831 - hypothetical protein, at 3,007,759 to 3,008,490
_2831
Dsui_2832: Dsui_2832 - hypothetical protein, at 3,008,992 to 3,009,474
_2832
Dsui_2833: Dsui_2833 - putative transcriptional regulator, at 3,009,450 to 3,009,686
_2833
Dsui_2834: Dsui_2834 - hypothetical protein, at 3,009,823 to 3,010,575
_2834
Dsui_2835: Dsui_2835 - hypothetical protein, at 3,010,624 to 3,010,998
_2835
Position (kb)
3009
3010 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3008.453 kb on - strand at 3008.471 kb on - strand at 3008.471 kb on - strand at 3008.552 kb on + strand at 3008.552 kb on + strand at 3008.562 kb on - strand at 3008.562 kb on - strand at 3008.571 kb on + strand at 3008.572 kb on - strand at 3008.579 kb on - strand at 3008.589 kb on - strand at 3008.604 kb on - strand at 3008.620 kb on + strand at 3008.670 kb on + strand at 3008.697 kb on + strand at 3008.710 kb on - strand at 3008.765 kb on - strand at 3008.794 kb on + strand at 3008.796 kb on - strand at 3008.862 kb on + strand at 3008.867 kb on + strand at 3008.880 kb on + strand at 3008.888 kb on - strand at 3008.897 kb on + strand at 3008.902 kb on + strand at 3008.934 kb on + strand at 3008.934 kb on - strand at 3008.942 kb on - strand at 3008.949 kb on + strand at 3008.983 kb on - strand at 3009.089 kb on + strand, within Dsui_2832 at 3009.108 kb on + strand, within Dsui_2832 at 3009.160 kb on + strand, within Dsui_2832 at 3009.233 kb on + strand, within Dsui_2832 at 3009.233 kb on + strand, within Dsui_2832 at 3009.251 kb on + strand, within Dsui_2832 at 3009.295 kb on + strand, within Dsui_2832 at 3009.333 kb on - strand, within Dsui_2832 at 3009.357 kb on + strand, within Dsui_2832 at 3009.420 kb on + strand, within Dsui_2832 at 3009.432 kb on - strand at 3009.434 kb on + strand at 3009.447 kb on + strand at 3009.447 kb on - strand at 3009.480 kb on + strand, within Dsui_2833 at 3009.500 kb on + strand, within Dsui_2833 at 3009.500 kb on + strand, within Dsui_2833 at 3009.506 kb on - strand, within Dsui_2833 at 3009.508 kb on - strand, within Dsui_2833 at 3009.526 kb on + strand, within Dsui_2833 at 3009.526 kb on + strand, within Dsui_2833 at 3009.544 kb on - strand, within Dsui_2833 at 3009.557 kb on + strand, within Dsui_2833 at 3009.562 kb on + strand, within Dsui_2833 at 3009.565 kb on - strand, within Dsui_2833 at 3009.620 kb on + strand, within Dsui_2833 at 3009.650 kb on - strand, within Dsui_2833 at 3009.679 kb on - strand at 3009.742 kb on + strand at 3009.932 kb on + strand, within Dsui_2834 at 3009.939 kb on + strand, within Dsui_2834 at 3009.947 kb on - strand, within Dsui_2834 at 3009.947 kb on - strand, within Dsui_2834 at 3009.947 kb on - strand, within Dsui_2834 at 3009.959 kb on + strand, within Dsui_2834 at 3010.007 kb on + strand, within Dsui_2834 at 3010.039 kb on - strand, within Dsui_2834 at 3010.060 kb on + strand, within Dsui_2834 at 3010.071 kb on + strand, within Dsui_2834 at 3010.071 kb on + strand, within Dsui_2834 at 3010.079 kb on - strand, within Dsui_2834 at 3010.079 kb on - strand at 3010.092 kb on - strand, within Dsui_2834 at 3010.114 kb on + strand, within Dsui_2834 at 3010.122 kb on - strand, within Dsui_2834 at 3010.123 kb on - strand, within Dsui_2834 at 3010.177 kb on - strand, within Dsui_2834 at 3010.195 kb on - strand, within Dsui_2834 at 3010.198 kb on + strand, within Dsui_2834 at 3010.198 kb on + strand, within Dsui_2834 at 3010.206 kb on + strand, within Dsui_2834 at 3010.206 kb on - strand, within Dsui_2834 at 3010.213 kb on + strand, within Dsui_2834 at 3010.213 kb on + strand, within Dsui_2834 at 3010.213 kb on + strand, within Dsui_2834 at 3010.221 kb on - strand, within Dsui_2834 at 3010.221 kb on - strand, within Dsui_2834 at 3010.221 kb on - strand, within Dsui_2834 at 3010.221 kb on - strand, within Dsui_2834 at 3010.232 kb on + strand, within Dsui_2834 at 3010.293 kb on - strand, within Dsui_2834 at 3010.296 kb on + strand, within Dsui_2834 at 3010.366 kb on + strand, within Dsui_2834 at 3010.367 kb on + strand, within Dsui_2834 at 3010.378 kb on + strand, within Dsui_2834 at 3010.382 kb on + strand, within Dsui_2834 at 3010.448 kb on + strand, within Dsui_2834 at 3010.508 kb on + strand at 3010.535 kb on + strand at 3010.548 kb on - strand at 3010.580 kb on + strand at 3010.596 kb on - strand at 3010.624 kb on + strand at 3010.646 kb on - strand at 3010.656 kb on - strand at 3010.672 kb on + strand, within Dsui_2835
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM remove 3,008,453 - -0.2 3,008,471 - +0.8 3,008,471 - -0.2 3,008,552 + -1.3 3,008,552 + -1.0 3,008,562 - +0.8 3,008,562 - +0.8 3,008,571 + -0.7 3,008,572 - +0.8 3,008,579 - +0.8 3,008,589 - +0.8 3,008,604 - +0.8 3,008,620 + +0.1 3,008,670 + -2.0 3,008,697 + -0.7 3,008,710 - +0.8 3,008,765 - +0.8 3,008,794 + -0.3 3,008,796 - +0.8 3,008,862 + -0.6 3,008,867 + -1.2 3,008,880 + -0.5 3,008,888 - -0.2 3,008,897 + -1.3 3,008,902 + -2.0 3,008,934 + -3.7 3,008,934 - +0.8 3,008,942 - -0.2 3,008,949 + -2.9 3,008,983 - -1.5 3,009,089 + Dsui_2832 0.20 -1.3 3,009,108 + Dsui_2832 0.24 -3.8 3,009,160 + Dsui_2832 0.35 -2.4 3,009,233 + Dsui_2832 0.50 -2.5 3,009,233 + Dsui_2832 0.50 -0.9 3,009,251 + Dsui_2832 0.54 -3.3 3,009,295 + Dsui_2832 0.63 -1.8 3,009,333 - Dsui_2832 0.71 -1.2 3,009,357 + Dsui_2832 0.76 -1.4 3,009,420 + Dsui_2832 0.89 +0.1 3,009,432 - +0.8 3,009,434 + -0.2 3,009,447 + -1.1 3,009,447 - -3.0 3,009,480 + Dsui_2833 0.13 +0.2 3,009,500 + Dsui_2833 0.21 -1.3 3,009,500 + Dsui_2833 0.21 -1.8 3,009,506 - Dsui_2833 0.24 +0.8 3,009,508 - Dsui_2833 0.24 -0.2 3,009,526 + Dsui_2833 0.32 -2.0 3,009,526 + Dsui_2833 0.32 -3.5 3,009,544 - Dsui_2833 0.40 +0.8 3,009,557 + Dsui_2833 0.45 -2.2 3,009,562 + Dsui_2833 0.47 -0.8 3,009,565 - Dsui_2833 0.49 -0.2 3,009,620 + Dsui_2833 0.72 -0.8 3,009,650 - Dsui_2833 0.84 +0.8 3,009,679 - -0.2 3,009,742 + -0.2 3,009,932 + Dsui_2834 0.14 +0.8 3,009,939 + Dsui_2834 0.15 +0.8 3,009,947 - Dsui_2834 0.16 +0.8 3,009,947 - Dsui_2834 0.16 -0.2 3,009,947 - Dsui_2834 0.16 +0.8 3,009,959 + Dsui_2834 0.18 +0.8 3,010,007 + Dsui_2834 0.24 +0.8 3,010,039 - Dsui_2834 0.29 -0.2 3,010,060 + Dsui_2834 0.31 -0.2 3,010,071 + Dsui_2834 0.33 -0.2 3,010,071 + Dsui_2834 0.33 -0.2 3,010,079 - Dsui_2834 0.34 -0.8 3,010,079 - +0.8 3,010,092 - Dsui_2834 0.36 +0.8 3,010,114 + Dsui_2834 0.39 +0.8 3,010,122 - Dsui_2834 0.40 -0.8 3,010,123 - Dsui_2834 0.40 -0.2 3,010,177 - Dsui_2834 0.47 -0.8 3,010,195 - Dsui_2834 0.49 -0.2 3,010,198 + Dsui_2834 0.50 +0.8 3,010,198 + Dsui_2834 0.50 +0.8 3,010,206 + Dsui_2834 0.51 +0.8 3,010,206 - Dsui_2834 0.51 -0.2 3,010,213 + Dsui_2834 0.52 -0.2 3,010,213 + Dsui_2834 0.52 -0.2 3,010,213 + Dsui_2834 0.52 +0.8 3,010,221 - Dsui_2834 0.53 -1.2 3,010,221 - Dsui_2834 0.53 -2.0 3,010,221 - Dsui_2834 0.53 +0.8 3,010,221 - Dsui_2834 0.53 +0.8 3,010,232 + Dsui_2834 0.54 +1.8 3,010,293 - Dsui_2834 0.62 +0.8 3,010,296 + Dsui_2834 0.63 +0.8 3,010,366 + Dsui_2834 0.72 +0.8 3,010,367 + Dsui_2834 0.72 -0.2 3,010,378 + Dsui_2834 0.74 -0.2 3,010,382 + Dsui_2834 0.74 +0.8 3,010,448 + Dsui_2834 0.83 -0.8 3,010,508 + -0.8 3,010,535 + -0.2 3,010,548 - +0.8 3,010,580 + +0.8 3,010,596 - +1.8 3,010,624 + +0.8 3,010,646 - -0.8 3,010,656 - -2.0 3,010,672 + Dsui_2835 0.13 +0.8
Or see this region's nucleotide sequence