Strain Fitness in Dechlorosoma suillum PS around Dsui_2799

Experiment: ALP with copper (II) chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2798 and Dsui_2799 are separated by 108 nucleotidesDsui_2799 and Dsui_2800 overlap by 1 nucleotides Dsui_2798: Dsui_2798 - arabinose efflux permease family protein, at 2,967,161 to 2,968,381 _2798 Dsui_2799: Dsui_2799 - oligopeptide/dipeptide ABC transporter, ATP-binding protein, at 2,968,490 to 2,970,502 _2799 Dsui_2800: Dsui_2800 - ABC-type dipeptide/oligopeptide/nickel transport system, permease component, at 2,970,502 to 2,971,950 _2800 Position (kb) 2968 2969 2970 2971Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2967.789 kb on + strand, within Dsui_2798at 2967.789 kb on + strand, within Dsui_2798at 2968.041 kb on + strand, within Dsui_2798at 2968.091 kb on - strand, within Dsui_2798at 2968.116 kb on + strand, within Dsui_2798at 2968.130 kb on + strand, within Dsui_2798at 2968.149 kb on - strandat 2968.173 kb on - strand, within Dsui_2798at 2968.218 kb on + strand, within Dsui_2798at 2968.233 kb on + strand, within Dsui_2798at 2968.233 kb on + strand, within Dsui_2798at 2968.241 kb on - strandat 2968.297 kb on + strandat 2968.316 kb on + strandat 2968.418 kb on - strandat 2968.540 kb on - strandat 2968.615 kb on - strandat 2968.633 kb on + strandat 2968.710 kb on - strand, within Dsui_2799at 2968.754 kb on + strandat 2968.764 kb on + strandat 2968.820 kb on + strandat 2968.844 kb on - strand, within Dsui_2799at 2968.909 kb on + strandat 2968.953 kb on + strand, within Dsui_2799at 2969.116 kb on + strandat 2969.116 kb on + strand, within Dsui_2799at 2969.340 kb on - strand, within Dsui_2799at 2969.381 kb on - strand, within Dsui_2799at 2969.555 kb on - strand, within Dsui_2799at 2969.563 kb on + strandat 2969.694 kb on + strandat 2969.868 kb on - strand, within Dsui_2799at 2970.108 kb on - strand, within Dsui_2799at 2970.263 kb on + strandat 2970.351 kb on - strandat 2970.396 kb on - strandat 2970.403 kb on - strandat 2970.436 kb on - strandat 2970.616 kb on - strandat 2970.630 kb on - strandat 2970.634 kb on - strandat 2970.635 kb on - strandat 2970.654 kb on + strand, within Dsui_2800at 2970.662 kb on - strandat 2970.662 kb on - strand, within Dsui_2800at 2970.678 kb on - strand, within Dsui_2800at 2970.715 kb on - strand, within Dsui_2800at 2970.721 kb on - strand, within Dsui_2800at 2970.721 kb on - strand, within Dsui_2800at 2970.721 kb on - strand, within Dsui_2800at 2970.728 kb on - strandat 2970.767 kb on + strandat 2970.842 kb on + strand, within Dsui_2800at 2970.861 kb on - strand, within Dsui_2800at 2971.005 kb on + strand, within Dsui_2800at 2971.037 kb on + strandat 2971.054 kb on - strand, within Dsui_2800at 2971.062 kb on + strand, within Dsui_2800at 2971.138 kb on + strandat 2971.138 kb on - strand, within Dsui_2800at 2971.166 kb on - strand, within Dsui_2800at 2971.198 kb on + strand, within Dsui_2800at 2971.227 kb on - strand, within Dsui_2800at 2971.232 kb on - strand, within Dsui_2800at 2971.232 kb on - strand, within Dsui_2800at 2971.232 kb on - strand, within Dsui_2800at 2971.251 kb on + strand, within Dsui_2800at 2971.441 kb on + strand, within Dsui_2800

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM
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2,967,789 + Dsui_2798 0.51 -1.3
2,967,789 + Dsui_2798 0.51 +0.7
2,968,041 + Dsui_2798 0.72 -2.1
2,968,091 - Dsui_2798 0.76 -1.3
2,968,116 + Dsui_2798 0.78 -1.8
2,968,130 + Dsui_2798 0.79 -0.8
2,968,149 - +0.7
2,968,173 - Dsui_2798 0.83 -0.8
2,968,218 + Dsui_2798 0.87 -2.1
2,968,233 + Dsui_2798 0.88 -2.3
2,968,233 + Dsui_2798 0.88 -0.8
2,968,241 - -0.3
2,968,297 + -1.2
2,968,316 + +0.2
2,968,418 - -0.8
2,968,540 - -3.9
2,968,615 - -3.1
2,968,633 + +0.7
2,968,710 - Dsui_2799 0.11 -3.0
2,968,754 + +0.7
2,968,764 + +0.7
2,968,820 + -0.3
2,968,844 - Dsui_2799 0.18 -4.6
2,968,909 + -0.3
2,968,953 + Dsui_2799 0.23 -1.6
2,969,116 + +0.7
2,969,116 + Dsui_2799 0.31 -2.1
2,969,340 - Dsui_2799 0.42 -2.8
2,969,381 - Dsui_2799 0.44 -2.6
2,969,555 - Dsui_2799 0.53 -1.9
2,969,563 + -0.3
2,969,694 + +0.7
2,969,868 - Dsui_2799 0.68 -2.8
2,970,108 - Dsui_2799 0.80 -4.0
2,970,263 + +0.7
2,970,351 - -2.7
2,970,396 - -4.2
2,970,403 - -4.8
2,970,436 - -2.6
2,970,616 - -3.0
2,970,630 - -2.3
2,970,634 - -2.1
2,970,635 - -1.3
2,970,654 + Dsui_2800 0.10 -0.8
2,970,662 - -0.8
2,970,662 - Dsui_2800 0.11 -1.5
2,970,678 - Dsui_2800 0.12 -3.9
2,970,715 - Dsui_2800 0.15 -4.5
2,970,721 - Dsui_2800 0.15 -2.5
2,970,721 - Dsui_2800 0.15 -1.3
2,970,721 - Dsui_2800 0.15 -2.1
2,970,728 - -0.3
2,970,767 + +0.7
2,970,842 + Dsui_2800 0.23 -0.3
2,970,861 - Dsui_2800 0.25 -1.9
2,971,005 + Dsui_2800 0.35 -0.3
2,971,037 + -0.3
2,971,054 - Dsui_2800 0.38 -0.3
2,971,062 + Dsui_2800 0.39 -1.8
2,971,138 + +0.7
2,971,138 - Dsui_2800 0.44 -1.5
2,971,166 - Dsui_2800 0.46 -3.3
2,971,198 + Dsui_2800 0.48 -0.3
2,971,227 - Dsui_2800 0.50 -3.7
2,971,232 - Dsui_2800 0.50 -2.7
2,971,232 - Dsui_2800 0.50 -2.6
2,971,232 - Dsui_2800 0.50 -3.2
2,971,251 + Dsui_2800 0.52 -1.3
2,971,441 + Dsui_2800 0.65 -1.3

Or see this region's nucleotide sequence