Strain Fitness in Dechlorosoma suillum PS around Dsui_2759

Experiment: ALP with copper (II) chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2758 and Dsui_2759 are separated by 283 nucleotidesDsui_2759 and Dsui_2760 are separated by 349 nucleotidesDsui_2760 and Dsui_2761 are separated by 97 nucleotides Dsui_2758: Dsui_2758 - putative SAM-dependent methyltransferase, at 2,917,617 to 2,918,633 _2758 Dsui_2759: Dsui_2759 - pseudouridine synthase family protein, at 2,918,917 to 2,920,515 _2759 Dsui_2760: Dsui_2760 - translation initiation factor IF-1, at 2,920,865 to 2,921,125 _2760 Dsui_2761: Dsui_2761 - hypothetical protein, at 2,921,223 to 2,921,387 _2761 Position (kb) 2918 2919 2920 2921Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2918.123 kb on + strand, within Dsui_2758at 2918.238 kb on - strand, within Dsui_2758at 2918.276 kb on + strand, within Dsui_2758at 2918.276 kb on + strand, within Dsui_2758at 2918.325 kb on - strand, within Dsui_2758at 2918.627 kb on + strandat 2918.671 kb on + strandat 2918.671 kb on + strandat 2918.671 kb on + strandat 2918.706 kb on - strandat 2918.877 kb on + strandat 2918.885 kb on - strandat 2918.914 kb on + strandat 2918.922 kb on - strandat 2919.074 kb on + strandat 2919.231 kb on - strand, within Dsui_2759at 2919.253 kb on + strand, within Dsui_2759at 2919.306 kb on - strandat 2919.801 kb on + strand, within Dsui_2759at 2919.869 kb on + strand, within Dsui_2759at 2920.235 kb on - strandat 2920.250 kb on - strandat 2920.278 kb on + strand, within Dsui_2759at 2920.286 kb on - strandat 2920.569 kb on + strandat 2920.606 kb on + strandat 2920.730 kb on + strandat 2921.200 kb on + strandat 2921.208 kb on - strandat 2921.369 kb on + strand, within Dsui_2761at 2921.498 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM
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2,918,123 + Dsui_2758 0.50 -5.1
2,918,238 - Dsui_2758 0.61 -0.3
2,918,276 + Dsui_2758 0.65 +0.1
2,918,276 + Dsui_2758 0.65 -4.2
2,918,325 - Dsui_2758 0.70 -0.3
2,918,627 + -0.2
2,918,671 + +0.4
2,918,671 + -3.5
2,918,671 + -0.3
2,918,706 - -0.3
2,918,877 + +0.7
2,918,885 - -0.3
2,918,914 + -0.2
2,918,922 - -0.9
2,919,074 + -1.0
2,919,231 - Dsui_2759 0.20 +0.7
2,919,253 + Dsui_2759 0.21 -1.7
2,919,306 - +0.7
2,919,801 + Dsui_2759 0.55 -0.9
2,919,869 + Dsui_2759 0.60 -1.3
2,920,235 - -0.3
2,920,250 - -0.3
2,920,278 + Dsui_2759 0.85 -1.8
2,920,286 - +0.7
2,920,569 + -0.7
2,920,606 + -0.4
2,920,730 + -0.0
2,921,200 + -0.8
2,921,208 - -0.3
2,921,369 + Dsui_2761 0.88 -0.8
2,921,498 + -1.2

Or see this region's nucleotide sequence