Strain Fitness in Dechlorosoma suillum PS around Dsui_2729

Experiment: ALP with copper (II) chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2728 and Dsui_2729 are separated by 13 nucleotidesDsui_2729 and Dsui_2730 are separated by 68 nucleotidesDsui_2730 and Dsui_2731 are separated by 11 nucleotides Dsui_2728: Dsui_2728 - tryptophanyl-tRNA synthetase, at 2,883,715 to 2,884,917 _2728 Dsui_2729: Dsui_2729 - Zn-dependent protease, at 2,884,931 to 2,885,584 _2729 Dsui_2730: Dsui_2730 - Sua5/YciO/YrdC/YwlC family protein, at 2,885,653 to 2,886,276 _2730 Dsui_2731: Dsui_2731 - putative metal-dependent phosphoesterase, PHP family, at 2,886,288 to 2,887,127 _2731 Position (kb) 2884 2885 2886Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2884.982 kb on - strandat 2885.081 kb on - strand, within Dsui_2729at 2885.128 kb on - strand, within Dsui_2729at 2885.167 kb on - strand, within Dsui_2729at 2885.208 kb on - strand, within Dsui_2729at 2885.208 kb on - strand, within Dsui_2729at 2885.208 kb on - strand, within Dsui_2729at 2885.208 kb on - strand, within Dsui_2729at 2885.565 kb on + strandat 2885.636 kb on - strandat 2885.641 kb on - strandat 2885.768 kb on + strandat 2885.776 kb on - strand, within Dsui_2730at 2885.799 kb on - strand, within Dsui_2730at 2885.799 kb on - strand, within Dsui_2730at 2885.800 kb on + strandat 2886.034 kb on - strand, within Dsui_2730at 2886.053 kb on + strandat 2886.063 kb on + strandat 2886.073 kb on + strand, within Dsui_2730at 2886.226 kb on - strandat 2886.226 kb on - strandat 2886.266 kb on + strandat 2886.319 kb on - strandat 2886.319 kb on - strandat 2886.339 kb on - strandat 2886.352 kb on + strandat 2886.362 kb on + strandat 2886.365 kb on - strandat 2886.365 kb on - strandat 2886.453 kb on - strand, within Dsui_2731at 2886.485 kb on - strand, within Dsui_2731at 2886.498 kb on - strand, within Dsui_2731at 2886.513 kb on + strand, within Dsui_2731

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM
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2,884,982 - -3.0
2,885,081 - Dsui_2729 0.23 -5.4
2,885,128 - Dsui_2729 0.30 -2.7
2,885,167 - Dsui_2729 0.36 -2.8
2,885,208 - Dsui_2729 0.42 -1.9
2,885,208 - Dsui_2729 0.42 -3.1
2,885,208 - Dsui_2729 0.42 -1.8
2,885,208 - Dsui_2729 0.42 -5.3
2,885,565 + -3.0
2,885,636 - -1.7
2,885,641 - -5.2
2,885,768 + -0.4
2,885,776 - Dsui_2730 0.20 -1.9
2,885,799 - Dsui_2730 0.23 -0.6
2,885,799 - Dsui_2730 0.23 -1.3
2,885,800 + +0.6
2,886,034 - Dsui_2730 0.61 -0.5
2,886,053 + +0.6
2,886,063 + -1.4
2,886,073 + Dsui_2730 0.67 +0.6
2,886,226 - -2.8
2,886,226 - -1.4
2,886,266 + -2.0
2,886,319 - -1.3
2,886,319 - -1.9
2,886,339 - -1.2
2,886,352 + -1.0
2,886,362 + -0.4
2,886,365 - -4.8
2,886,365 - -1.6
2,886,453 - Dsui_2731 0.20 -2.0
2,886,485 - Dsui_2731 0.23 -1.6
2,886,498 - Dsui_2731 0.25 -1.2
2,886,513 + Dsui_2731 0.27 -1.4

Or see this region's nucleotide sequence