Strain Fitness in Dechlorosoma suillum PS around Dsui_2674

Experiment: ALP with copper (II) chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2671 and Dsui_2672 are separated by 211 nucleotidesDsui_2672 and Dsui_2673 are separated by 50 nucleotidesDsui_2673 and Dsui_2674 overlap by 8 nucleotidesDsui_2674 and Dsui_2675 are separated by 60 nucleotidesDsui_2675 and Dsui_2676 overlap by 1 nucleotides Dsui_2671: Dsui_2671 - inosine-5''-monophosphate dehydrogenase, at 2,824,074 to 2,825,534 _2671 Dsui_2672: Dsui_2672 - hypothetical protein, at 2,825,746 to 2,826,096 _2672 Dsui_2673: Dsui_2673 - hypothetical protein, at 2,826,147 to 2,826,470 _2673 Dsui_2674: Dsui_2674 - oligoketide cyclase/lipid transport protein, at 2,826,463 to 2,826,894 _2674 Dsui_2675: Dsui_2675 - SsrA-binding protein, at 2,826,955 to 2,827,401 _2675 Dsui_2676: Dsui_2676 - putative membrane protein, at 2,827,401 to 2,828,021 _2676 Position (kb) 2826 2827Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2825.570 kb on + strandat 2825.575 kb on + strandat 2825.583 kb on - strandat 2825.583 kb on - strandat 2825.652 kb on - strandat 2825.676 kb on - strandat 2825.735 kb on + strandat 2825.758 kb on + strandat 2825.761 kb on + strandat 2825.764 kb on - strandat 2825.771 kb on + strandat 2825.803 kb on + strand, within Dsui_2672at 2825.806 kb on + strand, within Dsui_2672at 2825.815 kb on + strand, within Dsui_2672at 2825.823 kb on - strand, within Dsui_2672at 2825.830 kb on + strand, within Dsui_2672at 2825.830 kb on + strand, within Dsui_2672at 2825.837 kb on + strand, within Dsui_2672at 2825.894 kb on - strand, within Dsui_2672at 2825.937 kb on + strand, within Dsui_2672at 2825.969 kb on + strand, within Dsui_2672at 2826.065 kb on - strandat 2826.091 kb on + strandat 2826.096 kb on - strandat 2826.102 kb on + strandat 2826.115 kb on - strandat 2826.115 kb on - strandat 2826.115 kb on - strandat 2826.115 kb on - strandat 2826.130 kb on + strandat 2826.139 kb on - strandat 2826.228 kb on - strand, within Dsui_2673at 2826.294 kb on - strand, within Dsui_2673at 2826.365 kb on - strand, within Dsui_2673at 2826.409 kb on - strand, within Dsui_2673at 2826.897 kb on - strandat 2826.897 kb on - strandat 2826.980 kb on - strandat 2827.403 kb on - strandat 2827.426 kb on - strandat 2827.429 kb on - strandat 2827.439 kb on - strandat 2827.530 kb on + strand, within Dsui_2676at 2827.598 kb on - strand, within Dsui_2676at 2827.612 kb on - strand, within Dsui_2676

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM
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2,825,570 + -2.0
2,825,575 + -1.1
2,825,583 - -1.5
2,825,583 - -1.0
2,825,652 - -0.5
2,825,676 - -1.8
2,825,735 + -1.3
2,825,758 + -1.3
2,825,761 + -1.3
2,825,764 - -0.5
2,825,771 + -0.9
2,825,803 + Dsui_2672 0.16 -1.7
2,825,806 + Dsui_2672 0.17 -1.2
2,825,815 + Dsui_2672 0.20 -0.5
2,825,823 - Dsui_2672 0.22 -1.8
2,825,830 + Dsui_2672 0.24 -1.3
2,825,830 + Dsui_2672 0.24 -2.1
2,825,837 + Dsui_2672 0.26 -0.9
2,825,894 - Dsui_2672 0.42 -1.5
2,825,937 + Dsui_2672 0.54 -0.8
2,825,969 + Dsui_2672 0.64 -0.5
2,826,065 - +0.5
2,826,091 + -2.0
2,826,096 - -1.0
2,826,102 + -1.2
2,826,115 - -2.6
2,826,115 - -2.0
2,826,115 - -0.5
2,826,115 - -1.0
2,826,130 + -1.6
2,826,139 - -1.2
2,826,228 - Dsui_2673 0.25 -1.9
2,826,294 - Dsui_2673 0.45 -2.0
2,826,365 - Dsui_2673 0.67 -3.8
2,826,409 - Dsui_2673 0.81 -3.9
2,826,897 - -1.6
2,826,897 - -1.3
2,826,980 - +0.5
2,827,403 - -1.0
2,827,426 - -0.5
2,827,429 - +0.5
2,827,439 - -2.0
2,827,530 + Dsui_2676 0.21 -4.0
2,827,598 - Dsui_2676 0.32 +0.5
2,827,612 - Dsui_2676 0.34 -2.6

Or see this region's nucleotide sequence