Experiment: ALP with copper (II) chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2649 and Dsui_2650 are separated by 484 nucleotides Dsui_2650 and Dsui_2651 are separated by 68 nucleotides Dsui_2651 and Dsui_2652 are separated by 16 nucleotides
Dsui_2649: Dsui_2649 - transposase, TnpA family, at 2,802,979 to 2,805,981
_2649
Dsui_2650: Dsui_2650 - TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component, at 2,806,466 to 2,807,458
_2650
Dsui_2651: Dsui_2651 - ankyrin repeat-containing protein, at 2,807,527 to 2,808,171
_2651
Dsui_2652: Dsui_2652 - hydrolase, TatD family, at 2,808,188 to 2,808,970
_2652
Position (kb)
2806
2807
2808 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 2805.507 kb on + strand, within Dsui_2649 at 2805.545 kb on + strand, within Dsui_2649 at 2805.553 kb on - strand, within Dsui_2649 at 2805.558 kb on + strand, within Dsui_2649 at 2805.611 kb on - strand, within Dsui_2649 at 2805.643 kb on - strand, within Dsui_2649 at 2805.649 kb on - strand, within Dsui_2649 at 2805.649 kb on - strand, within Dsui_2649 at 2805.683 kb on - strand at 2805.792 kb on - strand at 2805.823 kb on + strand at 2805.849 kb on - strand at 2805.866 kb on + strand at 2806.061 kb on - strand at 2806.069 kb on - strand at 2806.071 kb on + strand at 2806.071 kb on + strand at 2806.136 kb on + strand at 2806.144 kb on - strand at 2806.144 kb on - strand at 2806.170 kb on + strand at 2806.200 kb on + strand at 2806.202 kb on - strand at 2806.208 kb on + strand at 2806.209 kb on - strand at 2806.215 kb on + strand at 2806.216 kb on - strand at 2806.222 kb on - strand at 2806.282 kb on - strand at 2806.282 kb on - strand at 2806.292 kb on - strand at 2806.325 kb on + strand at 2806.333 kb on - strand at 2806.368 kb on + strand at 2806.373 kb on + strand at 2806.373 kb on + strand at 2806.376 kb on - strand at 2806.381 kb on - strand at 2806.381 kb on - strand at 2806.383 kb on + strand at 2806.391 kb on - strand at 2806.391 kb on - strand at 2806.391 kb on - strand at 2806.391 kb on - strand at 2806.391 kb on - strand at 2806.398 kb on + strand at 2806.398 kb on + strand at 2806.403 kb on + strand at 2806.403 kb on + strand at 2806.403 kb on + strand at 2806.403 kb on + strand at 2806.411 kb on - strand at 2806.411 kb on - strand at 2806.411 kb on - strand at 2806.458 kb on + strand at 2806.494 kb on - strand at 2806.494 kb on - strand at 2806.517 kb on - strand at 2806.517 kb on - strand at 2806.518 kb on - strand at 2806.598 kb on + strand, within Dsui_2650 at 2806.606 kb on - strand, within Dsui_2650 at 2806.674 kb on - strand, within Dsui_2650 at 2806.735 kb on + strand, within Dsui_2650 at 2806.744 kb on + strand at 2806.744 kb on + strand at 2806.752 kb on - strand, within Dsui_2650 at 2806.762 kb on + strand, within Dsui_2650 at 2806.812 kb on + strand, within Dsui_2650 at 2806.889 kb on - strand, within Dsui_2650 at 2806.924 kb on + strand, within Dsui_2650 at 2806.924 kb on + strand, within Dsui_2650 at 2807.071 kb on - strand, within Dsui_2650 at 2807.071 kb on - strand, within Dsui_2650 at 2807.072 kb on - strand, within Dsui_2650 at 2807.106 kb on - strand, within Dsui_2650 at 2807.120 kb on + strand, within Dsui_2650 at 2807.356 kb on - strand, within Dsui_2650 at 2807.362 kb on - strand at 2807.425 kb on + strand at 2807.437 kb on + strand at 2807.468 kb on - strand at 2807.530 kb on + strand at 2807.530 kb on + strand at 2807.540 kb on + strand at 2807.604 kb on - strand, within Dsui_2651 at 2807.619 kb on + strand at 2807.637 kb on - strand at 2807.933 kb on - strand, within Dsui_2651 at 2808.088 kb on - strand at 2808.088 kb on - strand, within Dsui_2651 at 2808.089 kb on - strand at 2808.152 kb on + strand at 2808.256 kb on + strand at 2808.265 kb on + strand at 2808.349 kb on + strand, within Dsui_2652 at 2808.369 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM remove 2,805,507 + Dsui_2649 0.84 +0.6 2,805,545 + Dsui_2649 0.85 +0.6 2,805,553 - Dsui_2649 0.86 -0.4 2,805,558 + Dsui_2649 0.86 -0.4 2,805,611 - Dsui_2649 0.88 -0.4 2,805,643 - Dsui_2649 0.89 +0.6 2,805,649 - Dsui_2649 0.89 -1.0 2,805,649 - Dsui_2649 0.89 -1.4 2,805,683 - -1.7 2,805,792 - +0.6 2,805,823 + -0.4 2,805,849 - -2.9 2,805,866 + +0.6 2,806,061 - -0.4 2,806,069 - -0.4 2,806,071 + -2.4 2,806,071 + -0.4 2,806,136 + -2.9 2,806,144 - -1.7 2,806,144 - -1.7 2,806,170 + -1.0 2,806,200 + -1.0 2,806,202 - +2.2 2,806,208 + +0.6 2,806,209 - -2.0 2,806,215 + +0.6 2,806,216 - -0.4 2,806,222 - -2.6 2,806,282 - +0.6 2,806,282 - +0.6 2,806,292 - -2.2 2,806,325 + -0.4 2,806,333 - -2.0 2,806,368 + -1.0 2,806,373 + -1.7 2,806,373 + -3.6 2,806,376 - -0.4 2,806,381 - -2.4 2,806,381 - -2.4 2,806,383 + -1.0 2,806,391 - -3.0 2,806,391 - -1.9 2,806,391 - -0.1 2,806,391 - -1.7 2,806,391 - +0.6 2,806,398 + +0.6 2,806,398 + -1.0 2,806,403 + -3.5 2,806,403 + +0.6 2,806,403 + +0.6 2,806,403 + -0.4 2,806,411 - -0.4 2,806,411 - -1.5 2,806,411 - -2.0 2,806,458 + -2.0 2,806,494 - -2.9 2,806,494 - -4.7 2,806,517 - -1.3 2,806,517 - -3.5 2,806,518 - -1.0 2,806,598 + Dsui_2650 0.13 +0.6 2,806,606 - Dsui_2650 0.14 -1.6 2,806,674 - Dsui_2650 0.21 -1.8 2,806,735 + Dsui_2650 0.27 -2.6 2,806,744 + +0.6 2,806,744 + +0.6 2,806,752 - Dsui_2650 0.29 -2.2 2,806,762 + Dsui_2650 0.30 -1.4 2,806,812 + Dsui_2650 0.35 -1.4 2,806,889 - Dsui_2650 0.43 -0.9 2,806,924 + Dsui_2650 0.46 +0.6 2,806,924 + Dsui_2650 0.46 -1.0 2,807,071 - Dsui_2650 0.61 -4.4 2,807,071 - Dsui_2650 0.61 -5.2 2,807,072 - Dsui_2650 0.61 -2.7 2,807,106 - Dsui_2650 0.64 -3.0 2,807,120 + Dsui_2650 0.66 -3.0 2,807,356 - Dsui_2650 0.90 -1.2 2,807,362 - -1.0 2,807,425 + -0.4 2,807,437 + +0.6 2,807,468 - -2.1 2,807,530 + +0.6 2,807,530 + +0.6 2,807,540 + +0.6 2,807,604 - Dsui_2651 0.12 -1.2 2,807,619 + -1.4 2,807,637 - +0.6 2,807,933 - Dsui_2651 0.63 -1.0 2,808,088 - +0.6 2,808,088 - Dsui_2651 0.87 -3.5 2,808,089 - -0.4 2,808,152 + +0.6 2,808,256 + +0.6 2,808,265 + -1.4 2,808,349 + Dsui_2652 0.21 -1.4 2,808,369 + -0.4
Or see this region's nucleotide sequence