Experiment: ALP with copper (II) chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2527 and Dsui_2528 overlap by 4 nucleotides Dsui_2528 and Dsui_2529 are separated by 67 nucleotides Dsui_2529 and Dsui_2530 are separated by 55 nucleotides
Dsui_2527: Dsui_2527 - transposase, TnpA family, at 2,676,142 to 2,679,174
_2527
Dsui_2528: Dsui_2528 - putative signal transduction protein, at 2,679,171 to 2,681,186
_2528
Dsui_2529: Dsui_2529 - outer membrane assembly lipoprotein YfiO, at 2,681,254 to 2,682,051
_2529
Dsui_2530: Dsui_2530 - pseudouridine synthase, RluA family, at 2,682,107 to 2,683,234
_2530
Position (kb)
2679
2680
2681
2682 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2678.231 kb on + strand, within Dsui_2527 at 2678.388 kb on + strand, within Dsui_2527 at 2678.390 kb on - strand, within Dsui_2527 at 2678.633 kb on + strand, within Dsui_2527 at 2678.697 kb on + strand, within Dsui_2527 at 2678.721 kb on + strand, within Dsui_2527 at 2678.729 kb on - strand, within Dsui_2527 at 2678.826 kb on + strand, within Dsui_2527 at 2678.951 kb on + strand at 2679.373 kb on + strand, within Dsui_2528 at 2679.419 kb on - strand, within Dsui_2528 at 2679.419 kb on - strand, within Dsui_2528 at 2679.484 kb on + strand, within Dsui_2528 at 2679.492 kb on - strand at 2679.492 kb on - strand, within Dsui_2528 at 2679.520 kb on - strand, within Dsui_2528 at 2679.520 kb on - strand at 2679.520 kb on - strand, within Dsui_2528 at 2679.637 kb on + strand, within Dsui_2528 at 2679.752 kb on + strand, within Dsui_2528 at 2679.760 kb on - strand, within Dsui_2528 at 2679.780 kb on - strand, within Dsui_2528 at 2679.825 kb on - strand, within Dsui_2528 at 2679.885 kb on - strand, within Dsui_2528 at 2679.953 kb on + strand, within Dsui_2528 at 2679.953 kb on + strand, within Dsui_2528 at 2680.030 kb on + strand, within Dsui_2528 at 2680.046 kb on + strand, within Dsui_2528 at 2680.139 kb on - strand at 2680.419 kb on - strand, within Dsui_2528 at 2680.444 kb on - strand, within Dsui_2528 at 2680.447 kb on - strand, within Dsui_2528 at 2680.474 kb on - strand, within Dsui_2528 at 2680.498 kb on + strand, within Dsui_2528 at 2680.532 kb on + strand, within Dsui_2528 at 2680.597 kb on - strand, within Dsui_2528 at 2680.636 kb on + strand, within Dsui_2528 at 2680.685 kb on - strand, within Dsui_2528 at 2680.717 kb on + strand, within Dsui_2528 at 2680.783 kb on - strand, within Dsui_2528 at 2680.806 kb on - strand, within Dsui_2528 at 2680.899 kb on - strand, within Dsui_2528 at 2680.941 kb on + strand, within Dsui_2528 at 2680.941 kb on + strand, within Dsui_2528 at 2681.021 kb on - strand at 2681.095 kb on + strand at 2681.135 kb on + strand at 2681.152 kb on + strand at 2681.189 kb on - strand at 2681.239 kb on + strand at 2681.279 kb on + strand at 2681.284 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM remove 2,678,231 + Dsui_2527 0.69 -0.4 2,678,388 + Dsui_2527 0.74 -0.4 2,678,390 - Dsui_2527 0.74 -0.4 2,678,633 + Dsui_2527 0.82 -0.4 2,678,697 + Dsui_2527 0.84 -1.6 2,678,721 + Dsui_2527 0.85 -3.6 2,678,729 - Dsui_2527 0.85 -2.0 2,678,826 + Dsui_2527 0.88 -1.7 2,678,951 + -1.4 2,679,373 + Dsui_2528 0.10 -1.0 2,679,419 - Dsui_2528 0.12 +0.6 2,679,419 - Dsui_2528 0.12 -0.4 2,679,484 + Dsui_2528 0.16 -1.0 2,679,492 - +0.6 2,679,492 - Dsui_2528 0.16 -0.4 2,679,520 - Dsui_2528 0.17 -1.7 2,679,520 - +0.6 2,679,520 - Dsui_2528 0.17 -1.0 2,679,637 + Dsui_2528 0.23 +0.6 2,679,752 + Dsui_2528 0.29 +0.6 2,679,760 - Dsui_2528 0.29 +0.6 2,679,780 - Dsui_2528 0.30 +0.6 2,679,825 - Dsui_2528 0.32 -2.0 2,679,885 - Dsui_2528 0.35 -1.0 2,679,953 + Dsui_2528 0.39 +0.6 2,679,953 + Dsui_2528 0.39 -1.0 2,680,030 + Dsui_2528 0.43 -0.4 2,680,046 + Dsui_2528 0.43 +0.6 2,680,139 - -0.4 2,680,419 - Dsui_2528 0.62 +0.6 2,680,444 - Dsui_2528 0.63 -1.0 2,680,447 - Dsui_2528 0.63 -1.4 2,680,474 - Dsui_2528 0.65 +0.6 2,680,498 + Dsui_2528 0.66 +0.6 2,680,532 + Dsui_2528 0.68 +0.6 2,680,597 - Dsui_2528 0.71 -1.7 2,680,636 + Dsui_2528 0.73 -1.4 2,680,685 - Dsui_2528 0.75 +0.6 2,680,717 + Dsui_2528 0.77 +0.6 2,680,783 - Dsui_2528 0.80 -0.4 2,680,806 - Dsui_2528 0.81 +0.6 2,680,899 - Dsui_2528 0.86 +0.6 2,680,941 + Dsui_2528 0.88 +0.6 2,680,941 + Dsui_2528 0.88 -1.0 2,681,021 - -0.4 2,681,095 + -0.4 2,681,135 + -1.4 2,681,152 + +0.6 2,681,189 - -1.0 2,681,239 + +0.6 2,681,279 + +0.6 2,681,284 + -2.0
Or see this region's nucleotide sequence