Experiment: ALP with copper (II) chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2331 and Dsui_2332 are separated by 38 nucleotides Dsui_2332 and Dsui_2333 are separated by 10 nucleotides Dsui_2333 and Dsui_2334 are separated by 151 nucleotides
Dsui_2331: Dsui_2331 - heat shock protein, at 2,484,492 to 2,485,643
_2331
Dsui_2332: Dsui_2332 - uracil-xanthine permease, at 2,485,682 to 2,486,923
_2332
Dsui_2333: Dsui_2333 - uracil phosphoribosyltransferase, at 2,486,934 to 2,487,560
_2333
Dsui_2334: Dsui_2334 - tRNA-dihydrouridine synthase, at 2,487,712 to 2,488,674
_2334
Position (kb)
2485
2486
2487 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2484.996 kb on - strand, within Dsui_2331 at 2485.093 kb on + strand at 2485.167 kb on - strand, within Dsui_2331 at 2485.209 kb on + strand, within Dsui_2331 at 2485.243 kb on - strand, within Dsui_2331 at 2485.402 kb on - strand, within Dsui_2331 at 2485.425 kb on - strand, within Dsui_2331 at 2485.728 kb on - strand at 2485.764 kb on - strand at 2485.827 kb on - strand, within Dsui_2332 at 2485.853 kb on + strand, within Dsui_2332 at 2485.883 kb on + strand, within Dsui_2332 at 2485.891 kb on - strand, within Dsui_2332 at 2485.965 kb on - strand, within Dsui_2332 at 2486.116 kb on + strand, within Dsui_2332 at 2486.124 kb on - strand, within Dsui_2332 at 2486.127 kb on + strand at 2486.149 kb on + strand, within Dsui_2332 at 2486.162 kb on + strand at 2486.170 kb on - strand, within Dsui_2332 at 2486.170 kb on - strand, within Dsui_2332 at 2486.171 kb on - strand, within Dsui_2332 at 2486.218 kb on + strand at 2486.368 kb on - strand, within Dsui_2332 at 2486.533 kb on + strand at 2486.533 kb on + strand, within Dsui_2332 at 2486.536 kb on - strand, within Dsui_2332 at 2486.537 kb on - strand, within Dsui_2332 at 2486.541 kb on - strand, within Dsui_2332 at 2486.541 kb on - strand, within Dsui_2332 at 2486.554 kb on - strand, within Dsui_2332 at 2486.671 kb on - strand, within Dsui_2332 at 2486.680 kb on + strand at 2486.801 kb on - strand at 2486.803 kb on + strand at 2486.811 kb on - strand at 2486.903 kb on - strand at 2486.908 kb on - strand at 2486.975 kb on - strand at 2486.983 kb on + strand at 2486.983 kb on + strand at 2486.983 kb on + strand at 2486.991 kb on - strand at 2486.991 kb on - strand at 2487.076 kb on - strand, within Dsui_2333 at 2487.112 kb on + strand at 2487.197 kb on + strand, within Dsui_2333 at 2487.229 kb on + strand at 2487.248 kb on - strand, within Dsui_2333 at 2487.259 kb on + strand at 2487.450 kb on - strand, within Dsui_2333 at 2487.620 kb on - strand at 2487.749 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM remove 2,484,996 - Dsui_2331 0.44 +0.6 2,485,093 + +0.9 2,485,167 - Dsui_2331 0.59 -2.1 2,485,209 + Dsui_2331 0.62 -0.1 2,485,243 - Dsui_2331 0.65 -1.0 2,485,402 - Dsui_2331 0.79 -0.0 2,485,425 - Dsui_2331 0.81 -3.1 2,485,728 - +0.3 2,485,764 - -3.3 2,485,827 - Dsui_2332 0.12 +0.3 2,485,853 + Dsui_2332 0.14 +0.9 2,485,883 + Dsui_2332 0.16 -2.1 2,485,891 - Dsui_2332 0.17 -3.0 2,485,965 - Dsui_2332 0.23 -2.1 2,486,116 + Dsui_2332 0.35 -1.7 2,486,124 - Dsui_2332 0.36 -1.9 2,486,127 + -0.7 2,486,149 + Dsui_2332 0.38 -0.7 2,486,162 + +0.9 2,486,170 - Dsui_2332 0.39 -0.9 2,486,170 - Dsui_2332 0.39 +1.1 2,486,171 - Dsui_2332 0.39 -1.1 2,486,218 + +0.9 2,486,368 - Dsui_2332 0.55 -0.7 2,486,533 + -0.1 2,486,533 + Dsui_2332 0.69 -0.7 2,486,536 - Dsui_2332 0.69 -2.1 2,486,537 - Dsui_2332 0.69 +0.1 2,486,541 - Dsui_2332 0.69 +0.6 2,486,541 - Dsui_2332 0.69 -0.5 2,486,554 - Dsui_2332 0.70 +0.5 2,486,671 - Dsui_2332 0.80 -3.4 2,486,680 + +0.9 2,486,801 - -1.4 2,486,803 + +0.9 2,486,811 - +0.9 2,486,903 - -2.6 2,486,908 - -1.9 2,486,975 - -0.5 2,486,983 + -0.7 2,486,983 + -0.1 2,486,983 + +0.9 2,486,991 - -0.7 2,486,991 - -0.1 2,487,076 - Dsui_2333 0.23 -0.7 2,487,112 + -0.1 2,487,197 + Dsui_2333 0.42 +0.9 2,487,229 + -0.1 2,487,248 - Dsui_2333 0.50 -2.3 2,487,259 + +0.9 2,487,450 - Dsui_2333 0.82 -3.1 2,487,620 - -0.7 2,487,749 - -1.1
Or see this region's nucleotide sequence