Strain Fitness in Dechlorosoma suillum PS around Dsui_2181

Experiment: ALP with copper (II) chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2179 and Dsui_2180 are separated by 78 nucleotidesDsui_2180 and Dsui_2181 are separated by 125 nucleotidesDsui_2181 and Dsui_2182 are separated by 218 nucleotides Dsui_2179: Dsui_2179 - conserved protein of DIM6/NTAB family, at 2,315,179 to 2,315,745 _2179 Dsui_2180: Dsui_2180 - hypothetical protein, at 2,315,824 to 2,316,072 _2180 Dsui_2181: Dsui_2181 - DNA-binding domain-containing protein, AraC-type, at 2,316,198 to 2,316,983 _2181 Dsui_2182: Dsui_2182 - arabinose efflux permease family protein, at 2,317,202 to 2,318,506 _2182 Position (kb) 2316 2317Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2315.214 kb on - strandat 2315.254 kb on + strand, within Dsui_2179at 2315.313 kb on + strand, within Dsui_2179at 2315.377 kb on - strandat 2315.404 kb on + strand, within Dsui_2179at 2315.411 kb on - strandat 2315.412 kb on - strand, within Dsui_2179at 2315.498 kb on + strand, within Dsui_2179at 2315.570 kb on + strandat 2315.706 kb on + strandat 2315.734 kb on - strandat 2315.931 kb on + strandat 2316.023 kb on - strand, within Dsui_2180at 2316.036 kb on + strandat 2316.043 kb on + strand, within Dsui_2180at 2316.075 kb on - strandat 2316.168 kb on + strandat 2316.278 kb on - strand, within Dsui_2181at 2316.475 kb on - strand, within Dsui_2181at 2316.486 kb on - strand, within Dsui_2181at 2316.535 kb on + strandat 2316.580 kb on - strand, within Dsui_2181at 2316.742 kb on + strandat 2316.790 kb on + strand, within Dsui_2181at 2316.818 kb on - strand, within Dsui_2181at 2316.837 kb on - strandat 2316.853 kb on - strand, within Dsui_2181at 2316.854 kb on + strandat 2317.207 kb on - strandat 2317.296 kb on + strandat 2317.455 kb on - strandat 2317.543 kb on + strandat 2317.592 kb on + strand, within Dsui_2182at 2317.706 kb on + strandat 2317.957 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM
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2,315,214 - -1.5
2,315,254 + Dsui_2179 0.13 -1.8
2,315,313 + Dsui_2179 0.24 +0.4
2,315,377 - +0.8
2,315,404 + Dsui_2179 0.40 -2.6
2,315,411 - +0.8
2,315,412 - Dsui_2179 0.41 -1.5
2,315,498 + Dsui_2179 0.56 -1.7
2,315,570 + -0.2
2,315,706 + -1.5
2,315,734 - -0.0
2,315,931 + +0.8
2,316,023 - Dsui_2180 0.80 -0.7
2,316,036 + +0.8
2,316,043 + Dsui_2180 0.88 +0.8
2,316,075 - -1.1
2,316,168 + +0.8
2,316,278 - Dsui_2181 0.10 -0.2
2,316,475 - Dsui_2181 0.35 -0.8
2,316,486 - Dsui_2181 0.37 -1.5
2,316,535 + +0.8
2,316,580 - Dsui_2181 0.49 -3.8
2,316,742 + -0.2
2,316,790 + Dsui_2181 0.75 -1.2
2,316,818 - Dsui_2181 0.79 -0.8
2,316,837 - -0.2
2,316,853 - Dsui_2181 0.83 -3.8
2,316,854 + +0.8
2,317,207 - -0.8
2,317,296 + -0.2
2,317,455 - +0.8
2,317,543 + -0.2
2,317,592 + Dsui_2182 0.30 +0.8
2,317,706 + +0.8
2,317,957 - -0.2

Or see this region's nucleotide sequence