Experiment: ALP with copper (II) chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2143 and Dsui_2144 are separated by 276 nucleotides Dsui_2144 and Dsui_2145 are separated by 213 nucleotides Dsui_2145 and Dsui_2146 are separated by 109 nucleotides Dsui_2146 and Dsui_2147 are separated by 61 nucleotides
Dsui_2143: Dsui_2143 - hypothetical protein, at 2,272,314 to 2,272,856
_2143
Dsui_2144: Dsui_2144 - tRNA-Ser, at 2,273,133 to 2,273,220
_2144
Dsui_2145: Dsui_2145 - FtsH-interacting integral membrane protein, at 2,273,434 to 2,274,126
_2145
Dsui_2146: Dsui_2146 - integration host factor, beta subunit, at 2,274,236 to 2,274,559
_2146
Dsui_2147: Dsui_2147 - DNA recombination-dependent growth factor C, at 2,274,621 to 2,275,523
_2147
Position (kb)
2273
2274
2275 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2272.442 kb on - strand at 2272.467 kb on + strand, within Dsui_2143 at 2272.472 kb on + strand, within Dsui_2143 at 2272.475 kb on - strand at 2272.520 kb on + strand, within Dsui_2143 at 2272.679 kb on - strand at 2272.738 kb on + strand, within Dsui_2143 at 2272.757 kb on - strand at 2272.872 kb on + strand at 2272.872 kb on + strand at 2272.874 kb on + strand at 2272.911 kb on + strand at 2273.274 kb on + strand at 2273.333 kb on + strand at 2273.343 kb on + strand at 2273.343 kb on + strand at 2273.351 kb on - strand at 2273.388 kb on + strand at 2273.502 kb on + strand at 2273.751 kb on + strand, within Dsui_2145 at 2273.886 kb on + strand, within Dsui_2145 at 2274.085 kb on + strand at 2274.195 kb on + strand at 2274.582 kb on + strand at 2274.698 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM remove 2,272,442 - -0.7 2,272,467 + Dsui_2143 0.28 -0.2 2,272,472 + Dsui_2143 0.29 +0.8 2,272,475 - +0.8 2,272,520 + Dsui_2143 0.38 +0.8 2,272,679 - +0.8 2,272,738 + Dsui_2143 0.78 -0.2 2,272,757 - +0.8 2,272,872 + -1.5 2,272,872 + -0.2 2,272,874 + -1.5 2,272,911 + +0.8 2,273,274 + -0.1 2,273,333 + +0.9 2,273,343 + -0.7 2,273,343 + -0.1 2,273,351 - -0.1 2,273,388 + -4.1 2,273,502 + -3.4 2,273,751 + Dsui_2145 0.46 -5.4 2,273,886 + Dsui_2145 0.65 -4.8 2,274,085 + -4.9 2,274,195 + -0.7 2,274,582 + +0.9 2,274,698 - -2.9
Or see this region's nucleotide sequence