Strain Fitness in Dechlorosoma suillum PS around Dsui_2145

Experiment: ALP with copper (II) chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2143 and Dsui_2144 are separated by 276 nucleotidesDsui_2144 and Dsui_2145 are separated by 213 nucleotidesDsui_2145 and Dsui_2146 are separated by 109 nucleotidesDsui_2146 and Dsui_2147 are separated by 61 nucleotides Dsui_2143: Dsui_2143 - hypothetical protein, at 2,272,314 to 2,272,856 _2143 Dsui_2144: Dsui_2144 - tRNA-Ser, at 2,273,133 to 2,273,220 _2144 Dsui_2145: Dsui_2145 - FtsH-interacting integral membrane protein, at 2,273,434 to 2,274,126 _2145 Dsui_2146: Dsui_2146 - integration host factor, beta subunit, at 2,274,236 to 2,274,559 _2146 Dsui_2147: Dsui_2147 - DNA recombination-dependent growth factor C, at 2,274,621 to 2,275,523 _2147 Position (kb) 2273 2274 2275Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2272.442 kb on - strandat 2272.467 kb on + strand, within Dsui_2143at 2272.472 kb on + strand, within Dsui_2143at 2272.475 kb on - strandat 2272.520 kb on + strand, within Dsui_2143at 2272.679 kb on - strandat 2272.738 kb on + strand, within Dsui_2143at 2272.757 kb on - strandat 2272.872 kb on + strandat 2272.872 kb on + strandat 2272.874 kb on + strandat 2272.911 kb on + strandat 2273.274 kb on + strandat 2273.333 kb on + strandat 2273.343 kb on + strandat 2273.343 kb on + strandat 2273.351 kb on - strandat 2273.388 kb on + strandat 2273.502 kb on + strandat 2273.751 kb on + strand, within Dsui_2145at 2273.886 kb on + strand, within Dsui_2145at 2274.085 kb on + strandat 2274.195 kb on + strandat 2274.582 kb on + strandat 2274.698 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM
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2,272,442 - -0.7
2,272,467 + Dsui_2143 0.28 -0.2
2,272,472 + Dsui_2143 0.29 +0.8
2,272,475 - +0.8
2,272,520 + Dsui_2143 0.38 +0.8
2,272,679 - +0.8
2,272,738 + Dsui_2143 0.78 -0.2
2,272,757 - +0.8
2,272,872 + -1.5
2,272,872 + -0.2
2,272,874 + -1.5
2,272,911 + +0.8
2,273,274 + -0.1
2,273,333 + +0.9
2,273,343 + -0.7
2,273,343 + -0.1
2,273,351 - -0.1
2,273,388 + -4.1
2,273,502 + -3.4
2,273,751 + Dsui_2145 0.46 -5.4
2,273,886 + Dsui_2145 0.65 -4.8
2,274,085 + -4.9
2,274,195 + -0.7
2,274,582 + +0.9
2,274,698 - -2.9

Or see this region's nucleotide sequence