Strain Fitness in Dechlorosoma suillum PS around Dsui_2134

Experiment: ALP with copper (II) chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2130 and Dsui_2131 are separated by 352 nucleotidesDsui_2131 and Dsui_2132 are separated by 150 nucleotidesDsui_2132 and Dsui_2133 are separated by 105 nucleotidesDsui_2133 and Dsui_2134 are separated by 82 nucleotidesDsui_2134 and Dsui_2135 are separated by 273 nucleotidesDsui_2135 and Dsui_2136 are separated by 77 nucleotides Dsui_2130: Dsui_2130 - outer membrane receptor for ferrienterochelin and colicins, at 2,260,464 to 2,262,713 _2130 Dsui_2131: Dsui_2131 - tRNA-Arg, at 2,263,066 to 2,263,142 _2131 Dsui_2132: Dsui_2132 - tRNA-Arg, at 2,263,293 to 2,263,369 _2132 Dsui_2133: Dsui_2133 - tRNA-Ser, at 2,263,475 to 2,263,568 _2133 Dsui_2134: Dsui_2134 - aspartate kinase, monofunctional class, at 2,263,651 to 2,264,874 _2134 Dsui_2135: Dsui_2135 - putative transcriptional regulator, at 2,265,148 to 2,265,453 _2135 Dsui_2136: Dsui_2136 - Fe-S oxidoreductase, at 2,265,531 to 2,266,382 _2136 Position (kb) 2263 2264 2265Strain fitness (log2 ratio) -3 -2 -1 0 1at 2262.670 kb on - strandat 2262.681 kb on + strandat 2262.822 kb on + strandat 2262.829 kb on + strandat 2262.891 kb on + strandat 2263.128 kb on - strand, within Dsui_2131at 2263.130 kb on - strand, within Dsui_2131at 2263.190 kb on - strandat 2263.610 kb on - strandat 2263.611 kb on - strandat 2263.649 kb on + strandat 2263.649 kb on + strandat 2263.657 kb on - strandat 2263.657 kb on - strandat 2263.657 kb on - strandat 2263.660 kb on + strandat 2263.662 kb on - strandat 2264.933 kb on + strandat 2264.941 kb on + strandat 2264.941 kb on + strandat 2264.941 kb on - strandat 2264.941 kb on - strandat 2265.020 kb on + strandat 2265.304 kb on + strand, within Dsui_2135at 2265.423 kb on + strandat 2265.514 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM
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2,262,670 - -1.4
2,262,681 + +0.9
2,262,822 + +0.9
2,262,829 + +0.9
2,262,891 + -1.7
2,263,128 - Dsui_2131 0.81 -1.0
2,263,130 - Dsui_2131 0.83 -1.1
2,263,190 - -1.8
2,263,610 - -0.5
2,263,611 - -2.3
2,263,649 + -0.7
2,263,649 + -0.1
2,263,657 - -2.0
2,263,657 - -2.1
2,263,657 - -0.3
2,263,660 + -2.1
2,263,662 - +0.1
2,264,933 + -1.8
2,264,941 + -2.8
2,264,941 + -1.4
2,264,941 - +0.8
2,264,941 - -1.2
2,265,020 + -1.2
2,265,304 + Dsui_2135 0.51 -2.5
2,265,423 + -1.5
2,265,514 - -1.9

Or see this region's nucleotide sequence