Strain Fitness in Dechlorosoma suillum PS around Dsui_2068

Experiment: ALP with copper (II) chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2066 and Dsui_2067 are separated by 250 nucleotidesDsui_2067 and Dsui_2068 overlap by 8 nucleotidesDsui_2068 and Dsui_2069 are separated by 294 nucleotides Dsui_2066: Dsui_2066 - ABC-type metal ion transport system, periplasmic component/surface antigen, at 2,184,345 to 2,185,148 _2066 Dsui_2067: Dsui_2067 - ABC-type metal ion transport system, permease component, at 2,185,399 to 2,186,097 _2067 Dsui_2068: Dsui_2068 - ABC-type metal ion transport system, ATPase component, at 2,186,090 to 2,186,926 _2068 Dsui_2069: Dsui_2069 - acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II, at 2,187,221 to 2,188,810 _2069 Position (kb) 2186 2187Strain fitness (log2 ratio) -2 -1 0 1at 2185.135 kb on - strandat 2185.168 kb on - strandat 2185.168 kb on - strandat 2185.168 kb on - strandat 2185.223 kb on - strandat 2185.345 kb on + strandat 2185.389 kb on + strandat 2185.397 kb on - strandat 2185.419 kb on + strandat 2185.574 kb on - strand, within Dsui_2067at 2185.579 kb on - strand, within Dsui_2067at 2185.657 kb on + strand, within Dsui_2067at 2185.673 kb on + strand, within Dsui_2067at 2185.725 kb on + strand, within Dsui_2067at 2185.920 kb on - strand, within Dsui_2067at 2185.925 kb on - strand, within Dsui_2067at 2185.931 kb on - strand, within Dsui_2067at 2185.941 kb on - strand, within Dsui_2067at 2186.092 kb on + strandat 2186.275 kb on + strand, within Dsui_2068at 2186.433 kb on - strand, within Dsui_2068at 2186.532 kb on + strand, within Dsui_2068at 2186.640 kb on - strand, within Dsui_2068at 2186.703 kb on - strand, within Dsui_2068at 2186.733 kb on + strand, within Dsui_2068at 2186.838 kb on + strandat 2186.853 kb on - strandat 2186.853 kb on - strandat 2186.949 kb on - strandat 2186.949 kb on - strandat 2186.949 kb on - strandat 2186.951 kb on - strandat 2186.959 kb on - strandat 2187.041 kb on - strandat 2187.065 kb on - strandat 2187.226 kb on - strandat 2187.355 kb on - strandat 2187.375 kb on - strandat 2187.375 kb on - strandat 2187.417 kb on - strand, within Dsui_2069at 2187.484 kb on - strand, within Dsui_2069at 2187.610 kb on - strand, within Dsui_2069at 2187.710 kb on + strandat 2187.729 kb on + strandat 2187.755 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM
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2,185,135 - +0.9
2,185,168 - +0.4
2,185,168 - +0.8
2,185,168 - +0.9
2,185,223 - -1.0
2,185,345 + +0.9
2,185,389 + -0.7
2,185,397 - -0.8
2,185,419 + -1.1
2,185,574 - Dsui_2067 0.25 +1.1
2,185,579 - Dsui_2067 0.26 +1.1
2,185,657 + Dsui_2067 0.37 -2.1
2,185,673 + Dsui_2067 0.39 -1.1
2,185,725 + Dsui_2067 0.47 -0.1
2,185,920 - Dsui_2067 0.75 +1.6
2,185,925 - Dsui_2067 0.75 +1.3
2,185,931 - Dsui_2067 0.76 +1.4
2,185,941 - Dsui_2067 0.78 +1.4
2,186,092 + +0.9
2,186,275 + Dsui_2068 0.22 -0.7
2,186,433 - Dsui_2068 0.41 +1.3
2,186,532 + Dsui_2068 0.53 +0.9
2,186,640 - Dsui_2068 0.66 +1.2
2,186,703 - Dsui_2068 0.73 +1.3
2,186,733 + Dsui_2068 0.77 -1.4
2,186,838 + +0.9
2,186,853 - +1.3
2,186,853 - +0.9
2,186,949 - +0.6
2,186,949 - -0.9
2,186,949 - -1.1
2,186,951 - -0.7
2,186,959 - -0.6
2,187,041 - -0.5
2,187,065 - -1.6
2,187,226 - +0.9
2,187,355 - +0.2
2,187,375 - -0.1
2,187,375 - -2.7
2,187,417 - Dsui_2069 0.12 +0.9
2,187,484 - Dsui_2069 0.17 -0.3
2,187,610 - Dsui_2069 0.24 -0.9
2,187,710 + +0.9
2,187,729 + -0.7
2,187,755 + +0.9

Or see this region's nucleotide sequence