Strain Fitness in Dechlorosoma suillum PS around Dsui_1977

Experiment: ALP with copper (II) chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1976 and Dsui_1977 are separated by 109 nucleotidesDsui_1977 and Dsui_1978 are separated by 13 nucleotides Dsui_1976: Dsui_1976 - deacetylase, histone deacetylase/acetoin utilization protein, at 2,084,942 to 2,085,868 _1976 Dsui_1977: Dsui_1977 - dihydrodipicolinate synthase, at 2,085,978 to 2,086,856 _1977 Dsui_1978: Dsui_1978 - putative lipoprotein, at 2,086,870 to 2,088,003 _1978 Position (kb) 2085 2086 2087Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2085.048 kb on + strand, within Dsui_1976at 2085.099 kb on + strand, within Dsui_1976at 2085.099 kb on + strand, within Dsui_1976at 2085.099 kb on + strand, within Dsui_1976at 2085.135 kb on + strand, within Dsui_1976at 2085.143 kb on - strandat 2085.221 kb on - strandat 2085.262 kb on - strandat 2085.344 kb on + strand, within Dsui_1976at 2085.344 kb on + strand, within Dsui_1976at 2085.474 kb on + strand, within Dsui_1976at 2085.485 kb on + strand, within Dsui_1976at 2085.495 kb on + strand, within Dsui_1976at 2085.542 kb on + strand, within Dsui_1976at 2085.637 kb on + strand, within Dsui_1976at 2085.645 kb on - strand, within Dsui_1976at 2085.692 kb on + strand, within Dsui_1976at 2085.702 kb on + strand, within Dsui_1976at 2085.774 kb on - strand, within Dsui_1976at 2085.816 kb on + strandat 2085.822 kb on - strandat 2085.822 kb on - strandat 2085.822 kb on - strandat 2085.824 kb on - strandat 2085.858 kb on - strandat 2085.872 kb on - strandat 2085.890 kb on + strandat 2085.890 kb on + strandat 2085.895 kb on + strandat 2085.898 kb on - strandat 2085.898 kb on - strandat 2085.910 kb on + strandat 2085.910 kb on + strandat 2085.910 kb on + strandat 2085.910 kb on + strandat 2085.918 kb on + strandat 2085.918 kb on + strandat 2085.918 kb on + strandat 2085.918 kb on + strandat 2085.918 kb on + strandat 2085.918 kb on - strandat 2085.931 kb on - strandat 2085.938 kb on + strandat 2087.754 kb on + strand, within Dsui_1978at 2087.754 kb on + strand, within Dsui_1978

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM
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2,085,048 + Dsui_1976 0.11 -1.4
2,085,099 + Dsui_1976 0.17 -0.5
2,085,099 + Dsui_1976 0.17 -0.5
2,085,099 + Dsui_1976 0.17 -0.5
2,085,135 + Dsui_1976 0.21 -0.6
2,085,143 - -0.2
2,085,221 - +0.8
2,085,262 - +0.8
2,085,344 + Dsui_1976 0.43 -0.5
2,085,344 + Dsui_1976 0.43 +0.0
2,085,474 + Dsui_1976 0.57 -0.3
2,085,485 + Dsui_1976 0.59 -0.7
2,085,495 + Dsui_1976 0.60 -1.6
2,085,542 + Dsui_1976 0.65 -0.6
2,085,637 + Dsui_1976 0.75 -1.9
2,085,645 - Dsui_1976 0.76 -2.7
2,085,692 + Dsui_1976 0.81 -0.5
2,085,702 + Dsui_1976 0.82 -0.9
2,085,774 - Dsui_1976 0.90 -0.8
2,085,816 + -0.2
2,085,822 - +0.8
2,085,822 - -0.8
2,085,822 - -0.2
2,085,824 - -3.3
2,085,858 - +0.8
2,085,872 - -0.8
2,085,890 + -3.7
2,085,890 + +1.2
2,085,895 + -0.2
2,085,898 - +0.8
2,085,898 - +0.8
2,085,910 + -2.2
2,085,910 + -2.9
2,085,910 + -4.1
2,085,910 + -0.9
2,085,918 + -3.7
2,085,918 + -5.1
2,085,918 + -0.8
2,085,918 + -4.5
2,085,918 + -1.5
2,085,918 - +0.8
2,085,931 - +0.8
2,085,938 + +0.7
2,087,754 + Dsui_1978 0.78 -5.5
2,087,754 + Dsui_1978 0.78 -2.9

Or see this region's nucleotide sequence