Strain Fitness in Dechlorosoma suillum PS around Dsui_1889

Experiment: ALP with copper (II) chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1887 and Dsui_1888 overlap by 17 nucleotidesDsui_1888 and Dsui_1889 are separated by 1 nucleotidesDsui_1889 and Dsui_1890 overlap by 4 nucleotides Dsui_1887: Dsui_1887 - PAS domain S-box, at 1,985,686 to 1,987,896 _1887 Dsui_1888: Dsui_1888 - putative domain HDIG-containing protein, at 1,987,880 to 1,988,743 _1888 Dsui_1889: Dsui_1889 - hypothetical protein, at 1,988,745 to 1,989,068 _1889 Dsui_1890: Dsui_1890 - diguanylate cyclase (GGDEF) domain-containing protein, at 1,989,065 to 1,991,605 _1890 Position (kb) 1988 1989 1990Strain fitness (log2 ratio) -2 -1 0 1at 1987.810 kb on + strandat 1987.838 kb on - strandat 1987.902 kb on - strandat 1987.935 kb on - strandat 1988.129 kb on - strand, within Dsui_1888at 1988.160 kb on + strandat 1988.177 kb on + strandat 1988.184 kb on - strand, within Dsui_1888at 1988.438 kb on + strand, within Dsui_1888at 1988.440 kb on - strand, within Dsui_1888at 1988.776 kb on + strandat 1988.794 kb on - strand, within Dsui_1889at 1989.230 kb on + strandat 1989.245 kb on - strandat 1989.365 kb on + strand, within Dsui_1890at 1989.395 kb on - strand, within Dsui_1890at 1989.532 kb on + strand, within Dsui_1890at 1989.661 kb on + strand, within Dsui_1890at 1989.864 kb on - strand, within Dsui_1890at 1989.995 kb on - strand, within Dsui_1890at 1989.995 kb on - strand, within Dsui_1890at 1990.061 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM
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1,987,810 + +0.7
1,987,838 - -0.9
1,987,902 - +0.7
1,987,935 - +0.7
1,988,129 - Dsui_1888 0.29 -0.9
1,988,160 + +0.7
1,988,177 + +0.7
1,988,184 - Dsui_1888 0.35 -1.9
1,988,438 + Dsui_1888 0.65 -0.9
1,988,440 - Dsui_1888 0.65 -0.9
1,988,776 + +0.7
1,988,794 - Dsui_1889 0.15 -0.9
1,989,230 + +0.7
1,989,245 - -0.9
1,989,365 + Dsui_1890 0.12 +0.7
1,989,395 - Dsui_1890 0.13 -1.6
1,989,532 + Dsui_1890 0.18 -1.3
1,989,661 + Dsui_1890 0.23 -1.3
1,989,864 - Dsui_1890 0.31 -0.8
1,989,995 - Dsui_1890 0.37 +0.7
1,989,995 - Dsui_1890 0.37 +0.7
1,990,061 + -0.3

Or see this region's nucleotide sequence