Strain Fitness in Dechlorosoma suillum PS around Dsui_1785

Experiment: ALP with copper (II) chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1784 and Dsui_1785 are separated by 158 nucleotidesDsui_1785 and Dsui_1786 overlap by 4 nucleotides Dsui_1784: Dsui_1784 - flagellin/flagellar hook associated protein, at 1,874,168 to 1,875,028 _1784 Dsui_1785: Dsui_1785 - Tfp pilus assembly protein PilF, at 1,875,187 to 1,876,857 _1785 Dsui_1786: Dsui_1786 - tetratricopeptide repeat protein, at 1,876,854 to 1,878,557 _1786 Position (kb) 1875 1876 1877Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1874.197 kb on - strandat 1874.197 kb on - strandat 1874.202 kb on + strandat 1874.202 kb on + strandat 1874.202 kb on + strandat 1874.202 kb on + strandat 1874.202 kb on + strandat 1874.202 kb on + strandat 1874.202 kb on + strandat 1874.202 kb on - strandat 1874.210 kb on - strandat 1874.210 kb on - strandat 1874.210 kb on - strandat 1874.210 kb on - strandat 1874.226 kb on + strandat 1874.226 kb on - strandat 1874.234 kb on - strandat 1874.263 kb on - strand, within Dsui_1784at 1874.282 kb on + strand, within Dsui_1784at 1874.290 kb on - strand, within Dsui_1784at 1874.371 kb on - strand, within Dsui_1784at 1874.381 kb on - strand, within Dsui_1784at 1874.402 kb on - strand, within Dsui_1784at 1874.421 kb on + strand, within Dsui_1784at 1874.431 kb on + strand, within Dsui_1784at 1874.431 kb on + strand, within Dsui_1784at 1874.485 kb on + strand, within Dsui_1784at 1874.526 kb on + strand, within Dsui_1784at 1874.530 kb on + strand, within Dsui_1784at 1874.531 kb on + strand, within Dsui_1784at 1874.534 kb on - strand, within Dsui_1784at 1874.566 kb on + strand, within Dsui_1784at 1874.711 kb on + strandat 1874.719 kb on - strand, within Dsui_1784at 1874.780 kb on + strand, within Dsui_1784at 1874.838 kb on + strand, within Dsui_1784at 1874.840 kb on - strand, within Dsui_1784at 1874.846 kb on - strand, within Dsui_1784at 1874.872 kb on - strand, within Dsui_1784at 1874.881 kb on + strand, within Dsui_1784at 1874.958 kb on - strandat 1874.969 kb on - strandat 1874.969 kb on - strandat 1874.988 kb on + strandat 1875.003 kb on + strandat 1875.003 kb on + strandat 1875.022 kb on + strandat 1875.037 kb on + strandat 1875.037 kb on + strandat 1875.037 kb on - strandat 1875.045 kb on - strandat 1875.045 kb on - strandat 1875.045 kb on - strandat 1875.075 kb on - strandat 1875.075 kb on - strandat 1875.076 kb on - strandat 1875.211 kb on + strandat 1875.219 kb on + strandat 1875.294 kb on + strandat 1875.302 kb on - strandat 1875.319 kb on + strandat 1875.338 kb on - strandat 1875.399 kb on + strand, within Dsui_1785at 1875.432 kb on + strand, within Dsui_1785at 1875.499 kb on + strand, within Dsui_1785at 1875.500 kb on + strand, within Dsui_1785at 1875.508 kb on - strand, within Dsui_1785at 1875.576 kb on + strandat 1875.620 kb on - strand, within Dsui_1785at 1875.639 kb on - strand, within Dsui_1785at 1875.639 kb on - strand, within Dsui_1785at 1875.664 kb on + strand, within Dsui_1785at 1875.669 kb on + strand, within Dsui_1785at 1875.677 kb on - strand, within Dsui_1785at 1875.677 kb on - strand, within Dsui_1785at 1875.808 kb on + strand, within Dsui_1785at 1875.851 kb on + strand, within Dsui_1785at 1875.851 kb on + strandat 1875.955 kb on + strand, within Dsui_1785at 1875.963 kb on - strand, within Dsui_1785at 1876.139 kb on - strand, within Dsui_1785at 1876.226 kb on - strand, within Dsui_1785at 1876.233 kb on + strand, within Dsui_1785at 1876.253 kb on - strand, within Dsui_1785at 1876.357 kb on - strand, within Dsui_1785at 1876.361 kb on + strandat 1876.368 kb on - strand, within Dsui_1785at 1876.390 kb on - strand, within Dsui_1785at 1876.394 kb on - strand, within Dsui_1785at 1876.394 kb on - strand, within Dsui_1785at 1876.411 kb on + strand, within Dsui_1785at 1876.434 kb on + strand, within Dsui_1785at 1876.437 kb on - strand, within Dsui_1785at 1876.442 kb on - strand, within Dsui_1785at 1876.442 kb on - strand, within Dsui_1785at 1876.442 kb on - strand, within Dsui_1785at 1876.487 kb on + strand, within Dsui_1785at 1876.495 kb on - strand, within Dsui_1785at 1876.502 kb on + strand, within Dsui_1785at 1876.557 kb on + strand, within Dsui_1785at 1876.634 kb on - strand, within Dsui_1785at 1876.807 kb on - strandat 1876.890 kb on + strandat 1876.935 kb on + strandat 1877.023 kb on + strandat 1877.023 kb on + strandat 1877.031 kb on - strand, within Dsui_1786at 1877.036 kb on - strand, within Dsui_1786at 1877.046 kb on - strand, within Dsui_1786at 1877.162 kb on + strand, within Dsui_1786at 1877.225 kb on + strand, within Dsui_1786at 1877.233 kb on - strand, within Dsui_1786at 1877.249 kb on + strand, within Dsui_1786at 1877.257 kb on - strand, within Dsui_1786at 1877.257 kb on - strand, within Dsui_1786at 1877.257 kb on - strand, within Dsui_1786at 1877.274 kb on - strand, within Dsui_1786at 1877.319 kb on - strand, within Dsui_1786at 1877.371 kb on + strand, within Dsui_1786at 1877.517 kb on + strand, within Dsui_1786at 1877.525 kb on - strand, within Dsui_1786at 1877.525 kb on - strand, within Dsui_1786at 1877.657 kb on + strand, within Dsui_1786at 1877.765 kb on + strand, within Dsui_1786at 1877.765 kb on + strand, within Dsui_1786at 1877.765 kb on + strand, within Dsui_1786at 1877.773 kb on - strand, within Dsui_1786at 1877.773 kb on - strand, within Dsui_1786at 1877.773 kb on - strand, within Dsui_1786at 1877.827 kb on + strand, within Dsui_1786at 1877.837 kb on + strand, within Dsui_1786at 1877.845 kb on - strand, within Dsui_1786

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM
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1,874,197 - -1.2
1,874,197 - -1.5
1,874,202 + -0.2
1,874,202 + -0.2
1,874,202 + -0.2
1,874,202 + -1.5
1,874,202 + -0.8
1,874,202 + +0.8
1,874,202 + -0.2
1,874,202 - +0.8
1,874,210 - -0.2
1,874,210 - +0.8
1,874,210 - +0.8
1,874,210 - -0.2
1,874,226 + -1.2
1,874,226 - +0.8
1,874,234 - -0.8
1,874,263 - Dsui_1784 0.11 -0.2
1,874,282 + Dsui_1784 0.13 -0.2
1,874,290 - Dsui_1784 0.14 -1.2
1,874,371 - Dsui_1784 0.24 -2.0
1,874,381 - Dsui_1784 0.25 +0.8
1,874,402 - Dsui_1784 0.27 -1.8
1,874,421 + Dsui_1784 0.29 +0.8
1,874,431 + Dsui_1784 0.31 +0.8
1,874,431 + Dsui_1784 0.31 +0.8
1,874,485 + Dsui_1784 0.37 -2.2
1,874,526 + Dsui_1784 0.42 +0.8
1,874,530 + Dsui_1784 0.42 +0.8
1,874,531 + Dsui_1784 0.42 -2.4
1,874,534 - Dsui_1784 0.43 +1.2
1,874,566 + Dsui_1784 0.46 -0.2
1,874,711 + +0.8
1,874,719 - Dsui_1784 0.64 +0.8
1,874,780 + Dsui_1784 0.71 -0.8
1,874,838 + Dsui_1784 0.78 +0.8
1,874,840 - Dsui_1784 0.78 +0.8
1,874,846 - Dsui_1784 0.79 -0.8
1,874,872 - Dsui_1784 0.82 +0.8
1,874,881 + Dsui_1784 0.83 +0.8
1,874,958 - -0.2
1,874,969 - +0.8
1,874,969 - -1.2
1,874,988 + +0.8
1,875,003 + +0.8
1,875,003 + +0.8
1,875,022 + -1.5
1,875,037 + -0.2
1,875,037 + -0.8
1,875,037 - -0.2
1,875,045 - -0.2
1,875,045 - -2.2
1,875,045 - +0.8
1,875,075 - -0.2
1,875,075 - -0.2
1,875,076 - +0.8
1,875,211 + +0.8
1,875,219 + +0.8
1,875,294 + -1.5
1,875,302 - -0.8
1,875,319 + -0.2
1,875,338 - -2.4
1,875,399 + Dsui_1785 0.13 -0.8
1,875,432 + Dsui_1785 0.15 -0.2
1,875,499 + Dsui_1785 0.19 -0.2
1,875,500 + Dsui_1785 0.19 -2.2
1,875,508 - Dsui_1785 0.19 -1.5
1,875,576 + +0.8
1,875,620 - Dsui_1785 0.26 +0.8
1,875,639 - Dsui_1785 0.27 -1.2
1,875,639 - Dsui_1785 0.27 -3.1
1,875,664 + Dsui_1785 0.29 -1.5
1,875,669 + Dsui_1785 0.29 -0.8
1,875,677 - Dsui_1785 0.29 +0.8
1,875,677 - Dsui_1785 0.29 -0.8
1,875,808 + Dsui_1785 0.37 -0.2
1,875,851 + Dsui_1785 0.40 -0.8
1,875,851 + +0.8
1,875,955 + Dsui_1785 0.46 -1.5
1,875,963 - Dsui_1785 0.46 -2.9
1,876,139 - Dsui_1785 0.57 -1.5
1,876,226 - Dsui_1785 0.62 -3.0
1,876,233 + Dsui_1785 0.63 -0.8
1,876,253 - Dsui_1785 0.64 -1.5
1,876,357 - Dsui_1785 0.70 -4.0
1,876,361 + +0.8
1,876,368 - Dsui_1785 0.71 -3.9
1,876,390 - Dsui_1785 0.72 -2.4
1,876,394 - Dsui_1785 0.72 -3.9
1,876,394 - Dsui_1785 0.72 -2.1
1,876,411 + Dsui_1785 0.73 -0.8
1,876,434 + Dsui_1785 0.75 +0.8
1,876,437 - Dsui_1785 0.75 -4.0
1,876,442 - Dsui_1785 0.75 -2.8
1,876,442 - Dsui_1785 0.75 -4.3
1,876,442 - Dsui_1785 0.75 -3.3
1,876,487 + Dsui_1785 0.78 +0.8
1,876,495 - Dsui_1785 0.78 -0.2
1,876,502 + Dsui_1785 0.79 -0.8
1,876,557 + Dsui_1785 0.82 -1.2
1,876,634 - Dsui_1785 0.87 -3.9
1,876,807 - -3.5
1,876,890 + -0.2
1,876,935 + +0.8
1,877,023 + +0.8
1,877,023 + -0.2
1,877,031 - Dsui_1786 0.10 -1.0
1,877,036 - Dsui_1786 0.11 -3.9
1,877,046 - Dsui_1786 0.11 -1.8
1,877,162 + Dsui_1786 0.18 -0.2
1,877,225 + Dsui_1786 0.22 -1.2
1,877,233 - Dsui_1786 0.22 -3.8
1,877,249 + Dsui_1786 0.23 -0.8
1,877,257 - Dsui_1786 0.24 -1.0
1,877,257 - Dsui_1786 0.24 -1.6
1,877,257 - Dsui_1786 0.24 -1.6
1,877,274 - Dsui_1786 0.25 -2.1
1,877,319 - Dsui_1786 0.27 -1.6
1,877,371 + Dsui_1786 0.30 +0.8
1,877,517 + Dsui_1786 0.39 +0.8
1,877,525 - Dsui_1786 0.39 -0.4
1,877,525 - Dsui_1786 0.39 -2.8
1,877,657 + Dsui_1786 0.47 +0.8
1,877,765 + Dsui_1786 0.53 -0.2
1,877,765 + Dsui_1786 0.53 -0.2
1,877,765 + Dsui_1786 0.53 -0.2
1,877,773 - Dsui_1786 0.54 +0.8
1,877,773 - Dsui_1786 0.54 -1.3
1,877,773 - Dsui_1786 0.54 -0.7
1,877,827 + Dsui_1786 0.57 -2.5
1,877,837 + Dsui_1786 0.58 +0.8
1,877,845 - Dsui_1786 0.58 -1.3

Or see this region's nucleotide sequence