Experiment: ALP with copper (II) chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1784 and Dsui_1785 are separated by 158 nucleotides Dsui_1785 and Dsui_1786 overlap by 4 nucleotides
Dsui_1784: Dsui_1784 - flagellin/flagellar hook associated protein, at 1,874,168 to 1,875,028
_1784
Dsui_1785: Dsui_1785 - Tfp pilus assembly protein PilF, at 1,875,187 to 1,876,857
_1785
Dsui_1786: Dsui_1786 - tetratricopeptide repeat protein, at 1,876,854 to 1,878,557
_1786
Position (kb)
1875
1876
1877 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1874.197 kb on - strand at 1874.197 kb on - strand at 1874.202 kb on + strand at 1874.202 kb on + strand at 1874.202 kb on + strand at 1874.202 kb on + strand at 1874.202 kb on + strand at 1874.202 kb on + strand at 1874.202 kb on + strand at 1874.202 kb on - strand at 1874.210 kb on - strand at 1874.210 kb on - strand at 1874.210 kb on - strand at 1874.210 kb on - strand at 1874.226 kb on + strand at 1874.226 kb on - strand at 1874.234 kb on - strand at 1874.263 kb on - strand, within Dsui_1784 at 1874.282 kb on + strand, within Dsui_1784 at 1874.290 kb on - strand, within Dsui_1784 at 1874.371 kb on - strand, within Dsui_1784 at 1874.381 kb on - strand, within Dsui_1784 at 1874.402 kb on - strand, within Dsui_1784 at 1874.421 kb on + strand, within Dsui_1784 at 1874.431 kb on + strand, within Dsui_1784 at 1874.431 kb on + strand, within Dsui_1784 at 1874.485 kb on + strand, within Dsui_1784 at 1874.526 kb on + strand, within Dsui_1784 at 1874.530 kb on + strand, within Dsui_1784 at 1874.531 kb on + strand, within Dsui_1784 at 1874.534 kb on - strand, within Dsui_1784 at 1874.566 kb on + strand, within Dsui_1784 at 1874.711 kb on + strand at 1874.719 kb on - strand, within Dsui_1784 at 1874.780 kb on + strand, within Dsui_1784 at 1874.838 kb on + strand, within Dsui_1784 at 1874.840 kb on - strand, within Dsui_1784 at 1874.846 kb on - strand, within Dsui_1784 at 1874.872 kb on - strand, within Dsui_1784 at 1874.881 kb on + strand, within Dsui_1784 at 1874.958 kb on - strand at 1874.969 kb on - strand at 1874.969 kb on - strand at 1874.988 kb on + strand at 1875.003 kb on + strand at 1875.003 kb on + strand at 1875.022 kb on + strand at 1875.037 kb on + strand at 1875.037 kb on + strand at 1875.037 kb on - strand at 1875.045 kb on - strand at 1875.045 kb on - strand at 1875.045 kb on - strand at 1875.075 kb on - strand at 1875.075 kb on - strand at 1875.076 kb on - strand at 1875.211 kb on + strand at 1875.219 kb on + strand at 1875.294 kb on + strand at 1875.302 kb on - strand at 1875.319 kb on + strand at 1875.338 kb on - strand at 1875.399 kb on + strand, within Dsui_1785 at 1875.432 kb on + strand, within Dsui_1785 at 1875.499 kb on + strand, within Dsui_1785 at 1875.500 kb on + strand, within Dsui_1785 at 1875.508 kb on - strand, within Dsui_1785 at 1875.576 kb on + strand at 1875.620 kb on - strand, within Dsui_1785 at 1875.639 kb on - strand, within Dsui_1785 at 1875.639 kb on - strand, within Dsui_1785 at 1875.664 kb on + strand, within Dsui_1785 at 1875.669 kb on + strand, within Dsui_1785 at 1875.677 kb on - strand, within Dsui_1785 at 1875.677 kb on - strand, within Dsui_1785 at 1875.808 kb on + strand, within Dsui_1785 at 1875.851 kb on + strand, within Dsui_1785 at 1875.851 kb on + strand at 1875.955 kb on + strand, within Dsui_1785 at 1875.963 kb on - strand, within Dsui_1785 at 1876.139 kb on - strand, within Dsui_1785 at 1876.226 kb on - strand, within Dsui_1785 at 1876.233 kb on + strand, within Dsui_1785 at 1876.253 kb on - strand, within Dsui_1785 at 1876.357 kb on - strand, within Dsui_1785 at 1876.361 kb on + strand at 1876.368 kb on - strand, within Dsui_1785 at 1876.390 kb on - strand, within Dsui_1785 at 1876.394 kb on - strand, within Dsui_1785 at 1876.394 kb on - strand, within Dsui_1785 at 1876.411 kb on + strand, within Dsui_1785 at 1876.434 kb on + strand, within Dsui_1785 at 1876.437 kb on - strand, within Dsui_1785 at 1876.442 kb on - strand, within Dsui_1785 at 1876.442 kb on - strand, within Dsui_1785 at 1876.442 kb on - strand, within Dsui_1785 at 1876.487 kb on + strand, within Dsui_1785 at 1876.495 kb on - strand, within Dsui_1785 at 1876.502 kb on + strand, within Dsui_1785 at 1876.557 kb on + strand, within Dsui_1785 at 1876.634 kb on - strand, within Dsui_1785 at 1876.807 kb on - strand at 1876.890 kb on + strand at 1876.935 kb on + strand at 1877.023 kb on + strand at 1877.023 kb on + strand at 1877.031 kb on - strand, within Dsui_1786 at 1877.036 kb on - strand, within Dsui_1786 at 1877.046 kb on - strand, within Dsui_1786 at 1877.162 kb on + strand, within Dsui_1786 at 1877.225 kb on + strand, within Dsui_1786 at 1877.233 kb on - strand, within Dsui_1786 at 1877.249 kb on + strand, within Dsui_1786 at 1877.257 kb on - strand, within Dsui_1786 at 1877.257 kb on - strand, within Dsui_1786 at 1877.257 kb on - strand, within Dsui_1786 at 1877.274 kb on - strand, within Dsui_1786 at 1877.319 kb on - strand, within Dsui_1786 at 1877.371 kb on + strand, within Dsui_1786 at 1877.517 kb on + strand, within Dsui_1786 at 1877.525 kb on - strand, within Dsui_1786 at 1877.525 kb on - strand, within Dsui_1786 at 1877.657 kb on + strand, within Dsui_1786 at 1877.765 kb on + strand, within Dsui_1786 at 1877.765 kb on + strand, within Dsui_1786 at 1877.765 kb on + strand, within Dsui_1786 at 1877.773 kb on - strand, within Dsui_1786 at 1877.773 kb on - strand, within Dsui_1786 at 1877.773 kb on - strand, within Dsui_1786 at 1877.827 kb on + strand, within Dsui_1786 at 1877.837 kb on + strand, within Dsui_1786 at 1877.845 kb on - strand, within Dsui_1786
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM remove 1,874,197 - -1.2 1,874,197 - -1.5 1,874,202 + -0.2 1,874,202 + -0.2 1,874,202 + -0.2 1,874,202 + -1.5 1,874,202 + -0.8 1,874,202 + +0.8 1,874,202 + -0.2 1,874,202 - +0.8 1,874,210 - -0.2 1,874,210 - +0.8 1,874,210 - +0.8 1,874,210 - -0.2 1,874,226 + -1.2 1,874,226 - +0.8 1,874,234 - -0.8 1,874,263 - Dsui_1784 0.11 -0.2 1,874,282 + Dsui_1784 0.13 -0.2 1,874,290 - Dsui_1784 0.14 -1.2 1,874,371 - Dsui_1784 0.24 -2.0 1,874,381 - Dsui_1784 0.25 +0.8 1,874,402 - Dsui_1784 0.27 -1.8 1,874,421 + Dsui_1784 0.29 +0.8 1,874,431 + Dsui_1784 0.31 +0.8 1,874,431 + Dsui_1784 0.31 +0.8 1,874,485 + Dsui_1784 0.37 -2.2 1,874,526 + Dsui_1784 0.42 +0.8 1,874,530 + Dsui_1784 0.42 +0.8 1,874,531 + Dsui_1784 0.42 -2.4 1,874,534 - Dsui_1784 0.43 +1.2 1,874,566 + Dsui_1784 0.46 -0.2 1,874,711 + +0.8 1,874,719 - Dsui_1784 0.64 +0.8 1,874,780 + Dsui_1784 0.71 -0.8 1,874,838 + Dsui_1784 0.78 +0.8 1,874,840 - Dsui_1784 0.78 +0.8 1,874,846 - Dsui_1784 0.79 -0.8 1,874,872 - Dsui_1784 0.82 +0.8 1,874,881 + Dsui_1784 0.83 +0.8 1,874,958 - -0.2 1,874,969 - +0.8 1,874,969 - -1.2 1,874,988 + +0.8 1,875,003 + +0.8 1,875,003 + +0.8 1,875,022 + -1.5 1,875,037 + -0.2 1,875,037 + -0.8 1,875,037 - -0.2 1,875,045 - -0.2 1,875,045 - -2.2 1,875,045 - +0.8 1,875,075 - -0.2 1,875,075 - -0.2 1,875,076 - +0.8 1,875,211 + +0.8 1,875,219 + +0.8 1,875,294 + -1.5 1,875,302 - -0.8 1,875,319 + -0.2 1,875,338 - -2.4 1,875,399 + Dsui_1785 0.13 -0.8 1,875,432 + Dsui_1785 0.15 -0.2 1,875,499 + Dsui_1785 0.19 -0.2 1,875,500 + Dsui_1785 0.19 -2.2 1,875,508 - Dsui_1785 0.19 -1.5 1,875,576 + +0.8 1,875,620 - Dsui_1785 0.26 +0.8 1,875,639 - Dsui_1785 0.27 -1.2 1,875,639 - Dsui_1785 0.27 -3.1 1,875,664 + Dsui_1785 0.29 -1.5 1,875,669 + Dsui_1785 0.29 -0.8 1,875,677 - Dsui_1785 0.29 +0.8 1,875,677 - Dsui_1785 0.29 -0.8 1,875,808 + Dsui_1785 0.37 -0.2 1,875,851 + Dsui_1785 0.40 -0.8 1,875,851 + +0.8 1,875,955 + Dsui_1785 0.46 -1.5 1,875,963 - Dsui_1785 0.46 -2.9 1,876,139 - Dsui_1785 0.57 -1.5 1,876,226 - Dsui_1785 0.62 -3.0 1,876,233 + Dsui_1785 0.63 -0.8 1,876,253 - Dsui_1785 0.64 -1.5 1,876,357 - Dsui_1785 0.70 -4.0 1,876,361 + +0.8 1,876,368 - Dsui_1785 0.71 -3.9 1,876,390 - Dsui_1785 0.72 -2.4 1,876,394 - Dsui_1785 0.72 -3.9 1,876,394 - Dsui_1785 0.72 -2.1 1,876,411 + Dsui_1785 0.73 -0.8 1,876,434 + Dsui_1785 0.75 +0.8 1,876,437 - Dsui_1785 0.75 -4.0 1,876,442 - Dsui_1785 0.75 -2.8 1,876,442 - Dsui_1785 0.75 -4.3 1,876,442 - Dsui_1785 0.75 -3.3 1,876,487 + Dsui_1785 0.78 +0.8 1,876,495 - Dsui_1785 0.78 -0.2 1,876,502 + Dsui_1785 0.79 -0.8 1,876,557 + Dsui_1785 0.82 -1.2 1,876,634 - Dsui_1785 0.87 -3.9 1,876,807 - -3.5 1,876,890 + -0.2 1,876,935 + +0.8 1,877,023 + +0.8 1,877,023 + -0.2 1,877,031 - Dsui_1786 0.10 -1.0 1,877,036 - Dsui_1786 0.11 -3.9 1,877,046 - Dsui_1786 0.11 -1.8 1,877,162 + Dsui_1786 0.18 -0.2 1,877,225 + Dsui_1786 0.22 -1.2 1,877,233 - Dsui_1786 0.22 -3.8 1,877,249 + Dsui_1786 0.23 -0.8 1,877,257 - Dsui_1786 0.24 -1.0 1,877,257 - Dsui_1786 0.24 -1.6 1,877,257 - Dsui_1786 0.24 -1.6 1,877,274 - Dsui_1786 0.25 -2.1 1,877,319 - Dsui_1786 0.27 -1.6 1,877,371 + Dsui_1786 0.30 +0.8 1,877,517 + Dsui_1786 0.39 +0.8 1,877,525 - Dsui_1786 0.39 -0.4 1,877,525 - Dsui_1786 0.39 -2.8 1,877,657 + Dsui_1786 0.47 +0.8 1,877,765 + Dsui_1786 0.53 -0.2 1,877,765 + Dsui_1786 0.53 -0.2 1,877,765 + Dsui_1786 0.53 -0.2 1,877,773 - Dsui_1786 0.54 +0.8 1,877,773 - Dsui_1786 0.54 -1.3 1,877,773 - Dsui_1786 0.54 -0.7 1,877,827 + Dsui_1786 0.57 -2.5 1,877,837 + Dsui_1786 0.58 +0.8 1,877,845 - Dsui_1786 0.58 -1.3
Or see this region's nucleotide sequence