Experiment: ALP with copper (II) chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1706 and Dsui_1707 are separated by 15 nucleotides Dsui_1707 and Dsui_1708 are separated by 49 nucleotides Dsui_1708 and Dsui_1709 are separated by 16 nucleotides Dsui_1709 and Dsui_1710 are separated by 70 nucleotides
Dsui_1706: Dsui_1706 - methyl-accepting chemotaxis protein, at 1,792,764 to 1,793,987
_1706
Dsui_1707: Dsui_1707 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 1,794,003 to 1,794,368
_1707
Dsui_1708: Dsui_1708 - chemotaxis protein histidine kinase-like protein, at 1,794,418 to 1,796,877
_1708
Dsui_1709: Dsui_1709 - chemotaxis signal transduction protein, at 1,796,894 to 1,797,397
_1709
Dsui_1710: Dsui_1710 - PAS domain S-box, at 1,797,468 to 1,800,335
_1710
Position (kb)
1794
1795
1796
1797 Strain fitness (log2 ratio)
-2
-1
0
1 at 1793.619 kb on + strand, within Dsui_1706 at 1793.775 kb on - strand, within Dsui_1706 at 1793.799 kb on - strand at 1793.829 kb on + strand, within Dsui_1706 at 1793.854 kb on + strand, within Dsui_1706 at 1793.895 kb on + strand at 1793.914 kb on + strand at 1793.922 kb on - strand at 1793.955 kb on - strand at 1793.963 kb on - strand at 1793.981 kb on + strand at 1793.994 kb on + strand at 1794.006 kb on - strand at 1794.063 kb on + strand, within Dsui_1707 at 1794.066 kb on - strand, within Dsui_1707 at 1794.071 kb on - strand, within Dsui_1707 at 1794.087 kb on - strand, within Dsui_1707 at 1794.125 kb on + strand, within Dsui_1707 at 1794.147 kb on - strand, within Dsui_1707 at 1794.153 kb on - strand, within Dsui_1707 at 1794.153 kb on - strand, within Dsui_1707 at 1794.184 kb on + strand, within Dsui_1707 at 1794.192 kb on - strand, within Dsui_1707 at 1794.202 kb on - strand, within Dsui_1707 at 1794.221 kb on + strand, within Dsui_1707 at 1794.221 kb on + strand, within Dsui_1707 at 1794.221 kb on + strand, within Dsui_1707 at 1794.221 kb on + strand, within Dsui_1707 at 1794.226 kb on + strand, within Dsui_1707 at 1794.229 kb on - strand, within Dsui_1707 at 1794.229 kb on - strand, within Dsui_1707 at 1794.229 kb on - strand, within Dsui_1707 at 1794.234 kb on - strand, within Dsui_1707 at 1794.412 kb on + strand at 1794.438 kb on + strand at 1794.601 kb on - strand at 1794.652 kb on + strand at 1794.664 kb on - strand, within Dsui_1708 at 1794.686 kb on - strand, within Dsui_1708 at 1794.968 kb on + strand, within Dsui_1708 at 1794.973 kb on + strand, within Dsui_1708 at 1795.119 kb on - strand, within Dsui_1708 at 1795.333 kb on - strand, within Dsui_1708 at 1795.419 kb on - strand, within Dsui_1708 at 1795.480 kb on - strand, within Dsui_1708 at 1795.532 kb on - strand, within Dsui_1708 at 1795.576 kb on + strand, within Dsui_1708 at 1795.616 kb on - strand, within Dsui_1708 at 1795.645 kb on + strand, within Dsui_1708 at 1795.790 kb on - strand, within Dsui_1708 at 1795.996 kb on + strand, within Dsui_1708 at 1796.056 kb on + strand, within Dsui_1708 at 1796.230 kb on - strand at 1796.263 kb on - strand, within Dsui_1708 at 1796.324 kb on + strand, within Dsui_1708 at 1796.373 kb on - strand, within Dsui_1708 at 1796.538 kb on + strand, within Dsui_1708 at 1796.590 kb on - strand at 1796.643 kb on - strand at 1796.672 kb on + strand at 1796.680 kb on - strand at 1796.681 kb on + strand at 1796.710 kb on + strand at 1796.741 kb on - strand at 1796.749 kb on - strand at 1796.764 kb on + strand at 1796.809 kb on + strand at 1796.958 kb on + strand, within Dsui_1709 at 1796.966 kb on - strand, within Dsui_1709 at 1796.983 kb on - strand at 1797.125 kb on - strand, within Dsui_1709 at 1797.135 kb on - strand, within Dsui_1709 at 1797.147 kb on + strand, within Dsui_1709 at 1797.183 kb on + strand, within Dsui_1709 at 1797.233 kb on - strand at 1797.341 kb on - strand at 1797.351 kb on - strand at 1797.351 kb on - strand at 1797.394 kb on - strand at 1797.399 kb on - strand at 1797.476 kb on - strand at 1797.501 kb on - strand at 1797.557 kb on - strand at 1797.609 kb on - strand at 1797.671 kb on + strand at 1797.679 kb on - strand at 1797.698 kb on + strand at 1797.760 kb on + strand, within Dsui_1710 at 1797.797 kb on + strand, within Dsui_1710
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM remove 1,793,619 + Dsui_1706 0.70 -1.3 1,793,775 - Dsui_1706 0.83 -1.2 1,793,799 - +0.8 1,793,829 + Dsui_1706 0.87 -0.9 1,793,854 + Dsui_1706 0.89 -1.2 1,793,895 + -2.0 1,793,914 + -1.1 1,793,922 - +0.8 1,793,955 - -0.2 1,793,963 - +0.8 1,793,981 + -0.9 1,793,994 + -1.0 1,794,006 - -0.8 1,794,063 + Dsui_1707 0.16 +0.0 1,794,066 - Dsui_1707 0.17 +0.8 1,794,071 - Dsui_1707 0.19 +0.8 1,794,087 - Dsui_1707 0.23 -0.8 1,794,125 + Dsui_1707 0.33 -0.9 1,794,147 - Dsui_1707 0.39 -1.5 1,794,153 - Dsui_1707 0.41 +0.8 1,794,153 - Dsui_1707 0.41 -0.8 1,794,184 + Dsui_1707 0.49 -1.0 1,794,192 - Dsui_1707 0.52 +0.8 1,794,202 - Dsui_1707 0.54 -1.2 1,794,221 + Dsui_1707 0.60 -0.5 1,794,221 + Dsui_1707 0.60 -1.0 1,794,221 + Dsui_1707 0.60 -1.0 1,794,221 + Dsui_1707 0.60 -1.2 1,794,226 + Dsui_1707 0.61 -1.2 1,794,229 - Dsui_1707 0.62 -0.8 1,794,229 - Dsui_1707 0.62 +0.8 1,794,229 - Dsui_1707 0.62 -0.2 1,794,234 - Dsui_1707 0.63 -2.0 1,794,412 + -1.0 1,794,438 + -0.5 1,794,601 - -2.4 1,794,652 + -1.0 1,794,664 - Dsui_1708 0.10 -0.8 1,794,686 - Dsui_1708 0.11 -1.2 1,794,968 + Dsui_1708 0.22 +0.1 1,794,973 + Dsui_1708 0.23 +0.6 1,795,119 - Dsui_1708 0.28 -0.8 1,795,333 - Dsui_1708 0.37 +0.8 1,795,419 - Dsui_1708 0.41 -0.8 1,795,480 - Dsui_1708 0.43 +0.8 1,795,532 - Dsui_1708 0.45 +0.8 1,795,576 + Dsui_1708 0.47 -0.6 1,795,616 - Dsui_1708 0.49 -0.8 1,795,645 + Dsui_1708 0.50 -0.8 1,795,790 - Dsui_1708 0.56 -0.2 1,795,996 + Dsui_1708 0.64 -0.8 1,796,056 + Dsui_1708 0.67 -0.7 1,796,230 - +0.8 1,796,263 - Dsui_1708 0.75 +0.8 1,796,324 + Dsui_1708 0.77 -1.3 1,796,373 - Dsui_1708 0.79 -0.8 1,796,538 + Dsui_1708 0.86 -2.0 1,796,590 - -0.2 1,796,643 - -0.2 1,796,672 + -0.3 1,796,680 - -1.5 1,796,681 + -1.3 1,796,710 + -1.2 1,796,741 - +0.8 1,796,749 - -0.2 1,796,764 + -0.6 1,796,809 + -1.1 1,796,958 + Dsui_1709 0.13 -1.5 1,796,966 - Dsui_1709 0.14 +0.8 1,796,983 - +0.8 1,797,125 - Dsui_1709 0.46 -1.7 1,797,135 - Dsui_1709 0.48 -0.2 1,797,147 + Dsui_1709 0.50 -0.7 1,797,183 + Dsui_1709 0.57 -0.8 1,797,233 - -0.2 1,797,341 - +0.8 1,797,351 - +0.8 1,797,351 - +0.8 1,797,394 - +0.8 1,797,399 - -0.2 1,797,476 - +0.8 1,797,501 - -1.5 1,797,557 - -1.2 1,797,609 - +0.8 1,797,671 + -1.2 1,797,679 - -0.2 1,797,698 + -1.2 1,797,760 + Dsui_1710 0.10 -1.4 1,797,797 + Dsui_1710 0.11 +0.5
Or see this region's nucleotide sequence