Experiment: ALP with copper (II) chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1696 and Dsui_1697 are separated by 174 nucleotides Dsui_1697 and Dsui_1698 are separated by 120 nucleotides Dsui_1698 and Dsui_1699 are separated by 101 nucleotides Dsui_1699 and Dsui_1700 are separated by 12 nucleotides
Dsui_1696: Dsui_1696 - seryl-tRNA synthetase, at 1,784,106 to 1,785,389
_1696
Dsui_1697: Dsui_1697 - putative soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein, at 1,785,564 to 1,787,000
_1697
Dsui_1698: Dsui_1698 - tRNA-Ser, at 1,787,121 to 1,787,213
_1698
Dsui_1699: Dsui_1699 - cation/cationic drug transporter, at 1,787,315 to 1,787,671
_1699
Dsui_1700: Dsui_1700 - putative membrane protein, at 1,787,684 to 1,788,394
_1700
Position (kb)
1785
1786
1787
1788 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1785.364 kb on + strand at 1785.386 kb on - strand at 1785.465 kb on - strand at 1785.837 kb on - strand, within Dsui_1697 at 1785.869 kb on - strand, within Dsui_1697 at 1785.984 kb on + strand, within Dsui_1697 at 1786.014 kb on + strand, within Dsui_1697 at 1786.113 kb on + strand, within Dsui_1697 at 1786.113 kb on + strand at 1786.121 kb on - strand, within Dsui_1697 at 1786.162 kb on - strand, within Dsui_1697 at 1786.365 kb on - strand, within Dsui_1697 at 1786.459 kb on - strand, within Dsui_1697 at 1786.579 kb on - strand, within Dsui_1697 at 1786.587 kb on - strand, within Dsui_1697 at 1786.946 kb on - strand at 1786.946 kb on - strand at 1786.947 kb on - strand at 1786.978 kb on - strand at 1786.996 kb on - strand at 1787.080 kb on - strand at 1787.280 kb on + strand at 1787.356 kb on + strand, within Dsui_1699 at 1787.364 kb on - strand at 1787.374 kb on - strand, within Dsui_1699 at 1787.384 kb on + strand, within Dsui_1699 at 1787.386 kb on + strand, within Dsui_1699 at 1787.397 kb on + strand, within Dsui_1699 at 1787.449 kb on - strand, within Dsui_1699 at 1787.522 kb on + strand, within Dsui_1699 at 1787.522 kb on + strand, within Dsui_1699 at 1787.530 kb on - strand, within Dsui_1699 at 1787.530 kb on - strand, within Dsui_1699 at 1787.530 kb on - strand, within Dsui_1699 at 1787.535 kb on - strand, within Dsui_1699 at 1787.554 kb on - strand, within Dsui_1699 at 1787.622 kb on + strand, within Dsui_1699 at 1787.636 kb on - strand at 1787.652 kb on + strand at 1787.775 kb on + strand, within Dsui_1700 at 1787.793 kb on + strand, within Dsui_1700 at 1787.799 kb on + strand, within Dsui_1700
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM remove 1,785,364 + -1.8 1,785,386 - -1.5 1,785,465 - -2.0 1,785,837 - Dsui_1697 0.19 -1.0 1,785,869 - Dsui_1697 0.21 -4.5 1,785,984 + Dsui_1697 0.29 -1.5 1,786,014 + Dsui_1697 0.31 +0.8 1,786,113 + Dsui_1697 0.38 -0.2 1,786,113 + +0.8 1,786,121 - Dsui_1697 0.39 -1.6 1,786,162 - Dsui_1697 0.42 -2.2 1,786,365 - Dsui_1697 0.56 -1.5 1,786,459 - Dsui_1697 0.62 +0.8 1,786,579 - Dsui_1697 0.71 -0.6 1,786,587 - Dsui_1697 0.71 -1.4 1,786,946 - -1.5 1,786,946 - -1.7 1,786,947 - -2.1 1,786,978 - -1.0 1,786,996 - -0.9 1,787,080 - -1.2 1,787,280 + -0.9 1,787,356 + Dsui_1699 0.11 -1.2 1,787,364 - +0.8 1,787,374 - Dsui_1699 0.17 -0.8 1,787,384 + Dsui_1699 0.19 -2.0 1,787,386 + Dsui_1699 0.20 -2.6 1,787,397 + Dsui_1699 0.23 -2.6 1,787,449 - Dsui_1699 0.38 -0.2 1,787,522 + Dsui_1699 0.58 -2.2 1,787,522 + Dsui_1699 0.58 -0.8 1,787,530 - Dsui_1699 0.60 -2.2 1,787,530 - Dsui_1699 0.60 -0.2 1,787,530 - Dsui_1699 0.60 -0.2 1,787,535 - Dsui_1699 0.62 +0.8 1,787,554 - Dsui_1699 0.67 -0.2 1,787,622 + Dsui_1699 0.86 +0.4 1,787,636 - -2.5 1,787,652 + -1.5 1,787,775 + Dsui_1700 0.13 -0.2 1,787,793 + Dsui_1700 0.15 +0.8 1,787,799 + Dsui_1700 0.16 -0.2
Or see this region's nucleotide sequence