Strain Fitness in Dechlorosoma suillum PS around Dsui_1643

Experiment: ALP with copper (II) chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1642 and Dsui_1643 are separated by 15 nucleotidesDsui_1643 and Dsui_1644 are separated by 19 nucleotidesDsui_1644 and Dsui_1645 are separated by 10 nucleotides Dsui_1642: Dsui_1642 - hypothetical protein, at 1,723,836 to 1,725,134 _1642 Dsui_1643: Dsui_1643 - uncharacterized protein involved in response to NO, at 1,725,150 to 1,726,367 _1643 Dsui_1644: Dsui_1644 - hypothetical protein, at 1,726,387 to 1,726,773 _1644 Dsui_1645: Dsui_1645 - hemerythrin HHE cation binding domain-containing protein, at 1,726,784 to 1,727,362 _1645 Position (kb) 1725 1726 1727Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1724.177 kb on + strand, within Dsui_1642at 1724.177 kb on + strand, within Dsui_1642at 1724.177 kb on + strand, within Dsui_1642at 1724.185 kb on - strandat 1724.195 kb on - strandat 1724.195 kb on - strandat 1724.200 kb on - strandat 1724.269 kb on - strand, within Dsui_1642at 1724.339 kb on + strand, within Dsui_1642at 1724.360 kb on + strand, within Dsui_1642at 1724.394 kb on - strandat 1724.457 kb on + strand, within Dsui_1642at 1724.511 kb on + strand, within Dsui_1642at 1724.680 kb on + strandat 1724.741 kb on - strandat 1724.746 kb on - strand, within Dsui_1642at 1724.767 kb on + strand, within Dsui_1642at 1724.834 kb on + strand, within Dsui_1642at 1724.834 kb on + strand, within Dsui_1642at 1724.841 kb on + strand, within Dsui_1642at 1724.842 kb on - strandat 1724.865 kb on + strand, within Dsui_1642at 1724.873 kb on - strandat 1724.880 kb on + strand, within Dsui_1642at 1725.003 kb on + strand, within Dsui_1642at 1725.054 kb on + strandat 1725.081 kb on - strandat 1725.119 kb on + strandat 1725.204 kb on + strandat 1725.240 kb on + strandat 1725.264 kb on + strandat 1725.281 kb on - strandat 1725.758 kb on + strand, within Dsui_1643at 1725.758 kb on - strandat 1725.849 kb on - strandat 1725.949 kb on + strand, within Dsui_1643at 1725.957 kb on - strand, within Dsui_1643at 1726.000 kb on + strand, within Dsui_1643at 1726.021 kb on - strandat 1726.115 kb on + strand, within Dsui_1643at 1726.188 kb on - strand, within Dsui_1643at 1726.279 kb on + strandat 1726.372 kb on + strandat 1726.446 kb on + strand, within Dsui_1644at 1726.547 kb on - strand, within Dsui_1644at 1726.598 kb on - strand, within Dsui_1644at 1726.609 kb on + strand, within Dsui_1644at 1726.665 kb on + strand, within Dsui_1644at 1726.699 kb on + strand, within Dsui_1644at 1726.740 kb on - strandat 1726.796 kb on - strandat 1726.898 kb on - strand, within Dsui_1645at 1726.946 kb on - strand, within Dsui_1645at 1727.089 kb on + strand, within Dsui_1645at 1727.114 kb on + strand, within Dsui_1645at 1727.151 kb on - strand, within Dsui_1645at 1727.186 kb on + strand, within Dsui_1645at 1727.357 kb on + strandat 1727.357 kb on + strandat 1727.357 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM
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1,724,177 + Dsui_1642 0.26 -1.2
1,724,177 + Dsui_1642 0.26 -1.2
1,724,177 + Dsui_1642 0.26 -0.8
1,724,185 - +0.8
1,724,195 - +0.8
1,724,195 - +0.8
1,724,200 - +0.8
1,724,269 - Dsui_1642 0.33 +0.8
1,724,339 + Dsui_1642 0.39 -1.2
1,724,360 + Dsui_1642 0.40 -1.5
1,724,394 - -0.2
1,724,457 + Dsui_1642 0.48 -0.8
1,724,511 + Dsui_1642 0.52 -0.2
1,724,680 + -0.2
1,724,741 - -0.2
1,724,746 - Dsui_1642 0.70 -1.2
1,724,767 + Dsui_1642 0.72 -0.2
1,724,834 + Dsui_1642 0.77 -1.5
1,724,834 + Dsui_1642 0.77 -2.8
1,724,841 + Dsui_1642 0.77 +0.8
1,724,842 - +0.8
1,724,865 + Dsui_1642 0.79 -1.8
1,724,873 - +0.8
1,724,880 + Dsui_1642 0.80 -0.2
1,725,003 + Dsui_1642 0.90 -2.4
1,725,054 + -2.9
1,725,081 - -0.8
1,725,119 + -2.0
1,725,204 + -0.8
1,725,240 + -2.5
1,725,264 + +1.5
1,725,281 - -0.2
1,725,758 + Dsui_1643 0.50 -2.2
1,725,758 - +0.8
1,725,849 - +0.8
1,725,949 + Dsui_1643 0.66 -3.1
1,725,957 - Dsui_1643 0.66 -2.2
1,726,000 + Dsui_1643 0.70 -1.8
1,726,021 - -0.2
1,726,115 + Dsui_1643 0.79 -3.2
1,726,188 - Dsui_1643 0.85 -0.8
1,726,279 + +0.8
1,726,372 + -1.3
1,726,446 + Dsui_1644 0.15 -0.0
1,726,547 - Dsui_1644 0.41 -0.2
1,726,598 - Dsui_1644 0.55 -0.2
1,726,609 + Dsui_1644 0.57 -0.5
1,726,665 + Dsui_1644 0.72 -3.7
1,726,699 + Dsui_1644 0.81 -1.2
1,726,740 - -3.3
1,726,796 - +0.8
1,726,898 - Dsui_1645 0.20 +0.8
1,726,946 - Dsui_1645 0.28 +0.8
1,727,089 + Dsui_1645 0.53 -1.8
1,727,114 + Dsui_1645 0.57 -3.0
1,727,151 - Dsui_1645 0.63 -0.2
1,727,186 + Dsui_1645 0.69 -2.5
1,727,357 + -3.5
1,727,357 + -1.8
1,727,357 + -3.8

Or see this region's nucleotide sequence