Strain Fitness in Dechlorosoma suillum PS around Dsui_1570

Experiment: ALP with copper (II) chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1569 and Dsui_1570 are separated by 57 nucleotidesDsui_1570 and Dsui_1571 are separated by 99 nucleotidesDsui_1571 and Dsui_1572 are separated by 83 nucleotides Dsui_1569: Dsui_1569 - polyphosphate:AMP phosphotransferase, at 1,641,521 to 1,643,029 _1569 Dsui_1570: Dsui_1570 - amino-acid N-acetyltransferase, at 1,643,087 to 1,644,433 _1570 Dsui_1571: Dsui_1571 - Fe-S cluster protector protein, at 1,644,533 to 1,644,805 _1571 Dsui_1572: Dsui_1572 - hypothetical protein, at 1,644,889 to 1,645,296 _1572 Position (kb) 1643 1644 1645Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1642.138 kb on + strand, within Dsui_1569at 1642.246 kb on + strand, within Dsui_1569at 1642.289 kb on + strand, within Dsui_1569at 1642.291 kb on - strand, within Dsui_1569at 1642.312 kb on + strand, within Dsui_1569at 1642.312 kb on + strand, within Dsui_1569at 1642.312 kb on + strand, within Dsui_1569at 1642.381 kb on + strand, within Dsui_1569at 1642.383 kb on + strand, within Dsui_1569at 1642.484 kb on - strand, within Dsui_1569at 1642.719 kb on + strand, within Dsui_1569at 1642.781 kb on - strand, within Dsui_1569at 1643.034 kb on + strandat 1644.412 kb on + strandat 1644.477 kb on + strandat 1644.490 kb on - strandat 1644.775 kb on + strand, within Dsui_1571at 1644.775 kb on + strand, within Dsui_1571at 1644.783 kb on - strandat 1644.783 kb on - strandat 1644.789 kb on - strandat 1644.794 kb on + strandat 1644.921 kb on + strandat 1645.013 kb on - strand, within Dsui_1572at 1645.071 kb on + strand, within Dsui_1572at 1645.071 kb on + strand, within Dsui_1572at 1645.129 kb on - strand, within Dsui_1572at 1645.186 kb on + strand, within Dsui_1572at 1645.194 kb on - strandat 1645.216 kb on - strand, within Dsui_1572at 1645.408 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM
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1,642,138 + Dsui_1569 0.41 -1.8
1,642,246 + Dsui_1569 0.48 -4.5
1,642,289 + Dsui_1569 0.51 +1.5
1,642,291 - Dsui_1569 0.51 -2.5
1,642,312 + Dsui_1569 0.52 -2.0
1,642,312 + Dsui_1569 0.52 -0.8
1,642,312 + Dsui_1569 0.52 -0.9
1,642,381 + Dsui_1569 0.57 -0.1
1,642,383 + Dsui_1569 0.57 -3.3
1,642,484 - Dsui_1569 0.64 -0.2
1,642,719 + Dsui_1569 0.79 -2.8
1,642,781 - Dsui_1569 0.83 -0.2
1,643,034 + -1.2
1,644,412 + -0.8
1,644,477 + -1.4
1,644,490 - -2.2
1,644,775 + Dsui_1571 0.89 -0.9
1,644,775 + Dsui_1571 0.89 -0.5
1,644,783 - +0.8
1,644,783 - +0.8
1,644,789 - -0.2
1,644,794 + -1.1
1,644,921 + -1.9
1,645,013 - Dsui_1572 0.30 -1.5
1,645,071 + Dsui_1572 0.45 -2.8
1,645,071 + Dsui_1572 0.45 -2.4
1,645,129 - Dsui_1572 0.59 -0.2
1,645,186 + Dsui_1572 0.73 -1.8
1,645,194 - +0.8
1,645,216 - Dsui_1572 0.80 -1.8
1,645,408 + -3.0

Or see this region's nucleotide sequence