Strain Fitness in Dechlorosoma suillum PS around Dsui_1567

Experiment: ALP with copper (II) chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1565 and Dsui_1566 are separated by 20 nucleotidesDsui_1566 and Dsui_1567 are separated by 14 nucleotidesDsui_1567 and Dsui_1568 are separated by 121 nucleotidesDsui_1568 and Dsui_1569 are separated by 3 nucleotides Dsui_1565: Dsui_1565 - diguanylate cyclase (GGDEF) domain-containing protein, at 1,636,695 to 1,639,238 _1565 Dsui_1566: Dsui_1566 - inositol monophosphatase/fructose-1,6-bisphosphatase family protein, at 1,639,259 to 1,640,071 _1566 Dsui_1567: Dsui_1567 - Peroxiredoxin, at 1,640,086 to 1,640,646 _1567 Dsui_1568: Dsui_1568 - RNA methyltransferase, RsmE family, at 1,640,768 to 1,641,517 _1568 Dsui_1569: Dsui_1569 - polyphosphate:AMP phosphotransferase, at 1,641,521 to 1,643,029 _1569 Position (kb) 1640 1641Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1639.173 kb on + strandat 1639.181 kb on - strandat 1639.193 kb on - strandat 1639.239 kb on + strandat 1639.339 kb on + strandat 1639.363 kb on + strand, within Dsui_1566at 1639.371 kb on - strand, within Dsui_1566at 1639.371 kb on - strand, within Dsui_1566at 1639.371 kb on - strand, within Dsui_1566at 1639.371 kb on - strand, within Dsui_1566at 1639.379 kb on - strandat 1639.524 kb on + strand, within Dsui_1566at 1639.716 kb on - strand, within Dsui_1566at 1639.830 kb on - strand, within Dsui_1566at 1639.867 kb on + strandat 1639.898 kb on + strand, within Dsui_1566at 1639.927 kb on - strand, within Dsui_1566at 1639.953 kb on + strandat 1639.961 kb on - strandat 1640.012 kb on + strandat 1640.164 kb on + strand, within Dsui_1567at 1640.172 kb on - strand, within Dsui_1567at 1640.247 kb on - strand, within Dsui_1567at 1640.302 kb on - strand, within Dsui_1567at 1640.307 kb on - strandat 1640.454 kb on + strandat 1640.462 kb on - strand, within Dsui_1567at 1640.462 kb on - strand, within Dsui_1567at 1640.462 kb on - strand, within Dsui_1567at 1640.464 kb on + strandat 1640.467 kb on - strand, within Dsui_1567at 1640.478 kb on + strandat 1640.489 kb on + strandat 1640.497 kb on - strand, within Dsui_1567at 1640.676 kb on - strandat 1640.676 kb on - strandat 1640.676 kb on - strandat 1640.826 kb on + strandat 1640.826 kb on + strandat 1640.834 kb on - strandat 1640.834 kb on - strandat 1640.943 kb on - strandat 1640.956 kb on - strand, within Dsui_1568at 1641.030 kb on - strand, within Dsui_1568at 1641.240 kb on - strand, within Dsui_1568at 1641.613 kb on + strandat 1641.628 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM
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1,639,173 + +0.8
1,639,181 - +0.8
1,639,193 - +0.8
1,639,239 + -1.8
1,639,339 + -1.2
1,639,363 + Dsui_1566 0.13 -0.2
1,639,371 - Dsui_1566 0.14 -1.8
1,639,371 - Dsui_1566 0.14 -2.2
1,639,371 - Dsui_1566 0.14 +1.2
1,639,371 - Dsui_1566 0.14 -3.1
1,639,379 - +0.8
1,639,524 + Dsui_1566 0.33 -0.2
1,639,716 - Dsui_1566 0.56 -1.9
1,639,830 - Dsui_1566 0.70 -0.4
1,639,867 + +0.8
1,639,898 + Dsui_1566 0.79 -0.2
1,639,927 - Dsui_1566 0.82 -1.5
1,639,953 + +0.8
1,639,961 - +0.8
1,640,012 + -2.2
1,640,164 + Dsui_1567 0.14 +0.8
1,640,172 - Dsui_1567 0.15 -3.1
1,640,247 - Dsui_1567 0.29 -4.5
1,640,302 - Dsui_1567 0.39 -2.4
1,640,307 - -1.5
1,640,454 + +0.8
1,640,462 - Dsui_1567 0.67 -4.2
1,640,462 - Dsui_1567 0.67 -3.2
1,640,462 - Dsui_1567 0.67 -3.0
1,640,464 + +0.8
1,640,467 - Dsui_1567 0.68 +0.2
1,640,478 + +0.8
1,640,489 + +0.8
1,640,497 - Dsui_1567 0.73 -2.8
1,640,676 - -2.7
1,640,676 - -2.1
1,640,676 - -0.6
1,640,826 + -0.8
1,640,826 + -2.4
1,640,834 - +0.8
1,640,834 - +0.8
1,640,943 - +0.8
1,640,956 - Dsui_1568 0.25 -0.2
1,641,030 - Dsui_1568 0.35 +0.8
1,641,240 - Dsui_1568 0.63 -1.8
1,641,613 + -2.6
1,641,628 + -2.9

Or see this region's nucleotide sequence