Experiment: ALP with copper (II) chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1565 and Dsui_1566 are separated by 20 nucleotides Dsui_1566 and Dsui_1567 are separated by 14 nucleotides Dsui_1567 and Dsui_1568 are separated by 121 nucleotides Dsui_1568 and Dsui_1569 are separated by 3 nucleotides
Dsui_1565: Dsui_1565 - diguanylate cyclase (GGDEF) domain-containing protein, at 1,636,695 to 1,639,238
_1565
Dsui_1566: Dsui_1566 - inositol monophosphatase/fructose-1,6-bisphosphatase family protein, at 1,639,259 to 1,640,071
_1566
Dsui_1567: Dsui_1567 - Peroxiredoxin, at 1,640,086 to 1,640,646
_1567
Dsui_1568: Dsui_1568 - RNA methyltransferase, RsmE family, at 1,640,768 to 1,641,517
_1568
Dsui_1569: Dsui_1569 - polyphosphate:AMP phosphotransferase, at 1,641,521 to 1,643,029
_1569
Position (kb)
1640
1641 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1639.173 kb on + strand at 1639.181 kb on - strand at 1639.193 kb on - strand at 1639.239 kb on + strand at 1639.339 kb on + strand at 1639.363 kb on + strand, within Dsui_1566 at 1639.371 kb on - strand, within Dsui_1566 at 1639.371 kb on - strand, within Dsui_1566 at 1639.371 kb on - strand, within Dsui_1566 at 1639.371 kb on - strand, within Dsui_1566 at 1639.379 kb on - strand at 1639.524 kb on + strand, within Dsui_1566 at 1639.716 kb on - strand, within Dsui_1566 at 1639.830 kb on - strand, within Dsui_1566 at 1639.867 kb on + strand at 1639.898 kb on + strand, within Dsui_1566 at 1639.927 kb on - strand, within Dsui_1566 at 1639.953 kb on + strand at 1639.961 kb on - strand at 1640.012 kb on + strand at 1640.164 kb on + strand, within Dsui_1567 at 1640.172 kb on - strand, within Dsui_1567 at 1640.247 kb on - strand, within Dsui_1567 at 1640.302 kb on - strand, within Dsui_1567 at 1640.307 kb on - strand at 1640.454 kb on + strand at 1640.462 kb on - strand, within Dsui_1567 at 1640.462 kb on - strand, within Dsui_1567 at 1640.462 kb on - strand, within Dsui_1567 at 1640.464 kb on + strand at 1640.467 kb on - strand, within Dsui_1567 at 1640.478 kb on + strand at 1640.489 kb on + strand at 1640.497 kb on - strand, within Dsui_1567 at 1640.676 kb on - strand at 1640.676 kb on - strand at 1640.676 kb on - strand at 1640.826 kb on + strand at 1640.826 kb on + strand at 1640.834 kb on - strand at 1640.834 kb on - strand at 1640.943 kb on - strand at 1640.956 kb on - strand, within Dsui_1568 at 1641.030 kb on - strand, within Dsui_1568 at 1641.240 kb on - strand, within Dsui_1568 at 1641.613 kb on + strand at 1641.628 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM remove 1,639,173 + +0.8 1,639,181 - +0.8 1,639,193 - +0.8 1,639,239 + -1.8 1,639,339 + -1.2 1,639,363 + Dsui_1566 0.13 -0.2 1,639,371 - Dsui_1566 0.14 -1.8 1,639,371 - Dsui_1566 0.14 -2.2 1,639,371 - Dsui_1566 0.14 +1.2 1,639,371 - Dsui_1566 0.14 -3.1 1,639,379 - +0.8 1,639,524 + Dsui_1566 0.33 -0.2 1,639,716 - Dsui_1566 0.56 -1.9 1,639,830 - Dsui_1566 0.70 -0.4 1,639,867 + +0.8 1,639,898 + Dsui_1566 0.79 -0.2 1,639,927 - Dsui_1566 0.82 -1.5 1,639,953 + +0.8 1,639,961 - +0.8 1,640,012 + -2.2 1,640,164 + Dsui_1567 0.14 +0.8 1,640,172 - Dsui_1567 0.15 -3.1 1,640,247 - Dsui_1567 0.29 -4.5 1,640,302 - Dsui_1567 0.39 -2.4 1,640,307 - -1.5 1,640,454 + +0.8 1,640,462 - Dsui_1567 0.67 -4.2 1,640,462 - Dsui_1567 0.67 -3.2 1,640,462 - Dsui_1567 0.67 -3.0 1,640,464 + +0.8 1,640,467 - Dsui_1567 0.68 +0.2 1,640,478 + +0.8 1,640,489 + +0.8 1,640,497 - Dsui_1567 0.73 -2.8 1,640,676 - -2.7 1,640,676 - -2.1 1,640,676 - -0.6 1,640,826 + -0.8 1,640,826 + -2.4 1,640,834 - +0.8 1,640,834 - +0.8 1,640,943 - +0.8 1,640,956 - Dsui_1568 0.25 -0.2 1,641,030 - Dsui_1568 0.35 +0.8 1,641,240 - Dsui_1568 0.63 -1.8 1,641,613 + -2.6 1,641,628 + -2.9
Or see this region's nucleotide sequence