Experiment: ALP with copper (II) chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1436 and Dsui_1437 are separated by 18 nucleotides Dsui_1437 and Dsui_1438 are separated by 9 nucleotides Dsui_1438 and Dsui_1439 are separated by 9 nucleotides
Dsui_1436: Dsui_1436 - methyl-accepting chemotaxis protein, at 1,489,217 to 1,490,839
_1436
Dsui_1437: Dsui_1437 - chemotaxis protein histidine kinase-like protein, at 1,490,858 to 1,493,092
_1437
Dsui_1438: Dsui_1438 - putative NTP binding protein (contains STAS domain), at 1,493,102 to 1,493,410
_1438
Dsui_1439: Dsui_1439 - methyl-accepting chemotaxis protein, at 1,493,420 to 1,494,691
_1439
Position (kb)
1490
1491
1492
1493
1494 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1489.917 kb on + strand, within Dsui_1436 at 1489.924 kb on + strand, within Dsui_1436 at 1489.924 kb on + strand, within Dsui_1436 at 1489.953 kb on + strand, within Dsui_1436 at 1490.027 kb on - strand, within Dsui_1436 at 1490.067 kb on + strand, within Dsui_1436 at 1490.193 kb on - strand, within Dsui_1436 at 1490.366 kb on - strand, within Dsui_1436 at 1490.513 kb on - strand, within Dsui_1436 at 1490.520 kb on + strand, within Dsui_1436 at 1490.686 kb on - strand at 1490.687 kb on - strand at 1490.687 kb on - strand at 1490.922 kb on - strand at 1490.973 kb on + strand at 1491.012 kb on + strand at 1491.053 kb on - strand at 1491.306 kb on - strand, within Dsui_1437 at 1491.397 kb on + strand, within Dsui_1437 at 1491.402 kb on - strand, within Dsui_1437 at 1491.446 kb on + strand, within Dsui_1437 at 1491.454 kb on + strand, within Dsui_1437 at 1491.533 kb on - strand, within Dsui_1437 at 1491.536 kb on + strand, within Dsui_1437 at 1491.557 kb on - strand, within Dsui_1437 at 1491.561 kb on + strand, within Dsui_1437 at 1491.708 kb on - strand, within Dsui_1437 at 1491.848 kb on + strand, within Dsui_1437 at 1491.974 kb on - strand, within Dsui_1437 at 1491.986 kb on - strand, within Dsui_1437 at 1492.168 kb on - strand, within Dsui_1437 at 1492.247 kb on - strand, within Dsui_1437 at 1492.259 kb on - strand, within Dsui_1437 at 1492.349 kb on + strand, within Dsui_1437 at 1492.349 kb on + strand, within Dsui_1437 at 1492.405 kb on + strand, within Dsui_1437 at 1492.405 kb on + strand, within Dsui_1437 at 1492.494 kb on + strand, within Dsui_1437 at 1492.583 kb on + strand, within Dsui_1437 at 1492.591 kb on - strand, within Dsui_1437 at 1492.672 kb on + strand at 1492.826 kb on + strand, within Dsui_1437 at 1492.834 kb on - strand, within Dsui_1437 at 1492.834 kb on - strand, within Dsui_1437 at 1493.291 kb on - strand, within Dsui_1438 at 1493.325 kb on - strand, within Dsui_1438 at 1493.356 kb on - strand, within Dsui_1438 at 1493.379 kb on - strand, within Dsui_1438 at 1493.405 kb on + strand at 1493.418 kb on + strand at 1493.426 kb on - strand at 1493.490 kb on - strand at 1493.531 kb on + strand at 1493.552 kb on - strand, within Dsui_1439 at 1493.589 kb on + strand, within Dsui_1439 at 1493.599 kb on + strand, within Dsui_1439 at 1493.667 kb on + strand, within Dsui_1439 at 1493.692 kb on - strand, within Dsui_1439 at 1493.734 kb on - strand, within Dsui_1439 at 1493.782 kb on + strand, within Dsui_1439 at 1493.790 kb on + strand, within Dsui_1439 at 1493.790 kb on - strand, within Dsui_1439 at 1493.838 kb on + strand, within Dsui_1439 at 1494.073 kb on + strand, within Dsui_1439
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM remove 1,489,917 + Dsui_1436 0.43 -2.5 1,489,924 + Dsui_1436 0.44 +0.8 1,489,924 + Dsui_1436 0.44 -1.5 1,489,953 + Dsui_1436 0.45 -2.2 1,490,027 - Dsui_1436 0.50 -0.7 1,490,067 + Dsui_1436 0.52 -0.8 1,490,193 - Dsui_1436 0.60 -0.3 1,490,366 - Dsui_1436 0.71 -1.2 1,490,513 - Dsui_1436 0.80 -0.1 1,490,520 + Dsui_1436 0.80 +0.8 1,490,686 - -0.9 1,490,687 - -0.6 1,490,687 - -0.4 1,490,922 - -1.1 1,490,973 + +0.8 1,491,012 + -2.2 1,491,053 - -0.7 1,491,306 - Dsui_1437 0.20 -0.1 1,491,397 + Dsui_1437 0.24 -0.2 1,491,402 - Dsui_1437 0.24 -1.4 1,491,446 + Dsui_1437 0.26 +0.8 1,491,454 + Dsui_1437 0.27 -1.8 1,491,533 - Dsui_1437 0.30 -0.8 1,491,536 + Dsui_1437 0.30 -2.0 1,491,557 - Dsui_1437 0.31 -0.7 1,491,561 + Dsui_1437 0.31 -0.2 1,491,708 - Dsui_1437 0.38 -1.0 1,491,848 + Dsui_1437 0.44 -0.8 1,491,974 - Dsui_1437 0.50 -0.7 1,491,986 - Dsui_1437 0.50 -0.3 1,492,168 - Dsui_1437 0.59 -0.3 1,492,247 - Dsui_1437 0.62 -1.0 1,492,259 - Dsui_1437 0.63 -1.0 1,492,349 + Dsui_1437 0.67 -0.2 1,492,349 + Dsui_1437 0.67 +0.8 1,492,405 + Dsui_1437 0.69 -1.8 1,492,405 + Dsui_1437 0.69 -0.2 1,492,494 + Dsui_1437 0.73 -3.0 1,492,583 + Dsui_1437 0.77 -0.8 1,492,591 - Dsui_1437 0.78 -0.8 1,492,672 + +0.8 1,492,826 + Dsui_1437 0.88 -1.5 1,492,834 - Dsui_1437 0.88 -0.7 1,492,834 - Dsui_1437 0.88 -0.5 1,493,291 - Dsui_1438 0.61 -0.4 1,493,325 - Dsui_1438 0.72 -0.7 1,493,356 - Dsui_1438 0.82 -0.4 1,493,379 - Dsui_1438 0.90 +0.1 1,493,405 + -2.2 1,493,418 + -1.2 1,493,426 - -0.9 1,493,490 - -1.2 1,493,531 + -1.8 1,493,552 - Dsui_1439 0.10 -0.8 1,493,589 + Dsui_1439 0.13 +0.8 1,493,599 + Dsui_1439 0.14 -1.5 1,493,667 + Dsui_1439 0.19 -1.5 1,493,692 - Dsui_1439 0.21 -0.6 1,493,734 - Dsui_1439 0.25 -0.8 1,493,782 + Dsui_1439 0.28 -0.2 1,493,790 + Dsui_1439 0.29 -0.2 1,493,790 - Dsui_1439 0.29 -0.7 1,493,838 + Dsui_1439 0.33 -1.2 1,494,073 + Dsui_1439 0.51 -0.8
Or see this region's nucleotide sequence