Experiment: ALP with copper (II) chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1400 and Dsui_1401 are separated by 83 nucleotides Dsui_1401 and Dsui_1402 are separated by 97 nucleotides Dsui_1402 and Dsui_1403 overlap by 1 nucleotides Dsui_1403 and Dsui_1404 are separated by 19 nucleotides
Dsui_1400: Dsui_1400 - ABC-type transport system involved in resistance to organic solvents, periplasmic component, at 1,460,525 to 1,460,995
_1400
Dsui_1401: Dsui_1401 - surface lipoprotein, at 1,461,079 to 1,461,798
_1401
Dsui_1402: Dsui_1402 - ABC-type transport system involved in resistance to organic solvents, auxiliary component, at 1,461,896 to 1,462,525
_1402
Dsui_1403: Dsui_1403 - putative NTP binding protein (contains STAS domain), at 1,462,525 to 1,462,812
_1403
Dsui_1404: Dsui_1404 - ABC-type multidrug transport system, ATPase component, at 1,462,832 to 1,463,755
_1404
Position (kb)
1461
1462
1463 Strain fitness (log2 ratio)
-7
-6
-5
-4
-3
-2
-1
0
1 at 1460.949 kb on + strand at 1460.986 kb on - strand at 1461.062 kb on - strand at 1461.095 kb on - strand at 1461.099 kb on + strand at 1461.120 kb on + strand at 1461.120 kb on + strand at 1461.150 kb on - strand at 1461.190 kb on + strand, within Dsui_1401 at 1461.191 kb on - strand, within Dsui_1401 at 1461.228 kb on + strand, within Dsui_1401 at 1461.240 kb on + strand, within Dsui_1401 at 1461.284 kb on - strand at 1461.291 kb on + strand, within Dsui_1401 at 1461.637 kb on - strand at 1461.879 kb on + strand at 1462.045 kb on + strand, within Dsui_1402 at 1462.141 kb on + strand, within Dsui_1402 at 1462.336 kb on + strand, within Dsui_1402 at 1462.514 kb on + strand at 1462.562 kb on + strand, within Dsui_1403 at 1462.806 kb on + strand at 1462.807 kb on + strand at 1462.990 kb on + strand, within Dsui_1404 at 1463.451 kb on + strand, within Dsui_1404
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM remove 1,460,949 + -3.6 1,460,986 - -0.2 1,461,062 - +0.8 1,461,095 - +0.8 1,461,099 + -4.3 1,461,120 + -5.7 1,461,120 + -5.3 1,461,150 - -0.2 1,461,190 + Dsui_1401 0.15 -5.1 1,461,191 - Dsui_1401 0.16 +0.8 1,461,228 + Dsui_1401 0.21 -4.4 1,461,240 + Dsui_1401 0.22 -5.3 1,461,284 - +0.8 1,461,291 + Dsui_1401 0.29 -7.1 1,461,637 - +0.8 1,461,879 + -4.9 1,462,045 + Dsui_1402 0.24 -5.3 1,462,141 + Dsui_1402 0.39 -5.4 1,462,336 + Dsui_1402 0.70 -5.0 1,462,514 + -3.8 1,462,562 + Dsui_1403 0.13 -4.1 1,462,806 + -2.6 1,462,807 + -0.8 1,462,990 + Dsui_1404 0.17 -1.6 1,463,451 + Dsui_1404 0.67 -4.9
Or see this region's nucleotide sequence