Experiment: ALP with copper (II) chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1364 and Dsui_1365 are separated by 15 nucleotides Dsui_1365 and Dsui_1366 are separated by 36 nucleotides Dsui_1366 and Dsui_1367 are separated by 120 nucleotides Dsui_1367 and Dsui_1368 are separated by 8 nucleotides
Dsui_1364: Dsui_1364 - serine phosphatase RsbU, regulator of sigma subunit, at 1,417,465 to 1,419,462
_1364
Dsui_1365: Dsui_1365 - hypothetical protein, at 1,419,478 to 1,419,693
_1365
Dsui_1366: Dsui_1366 - glutaminyl-tRNA synthetase, at 1,419,730 to 1,421,511
_1366
Dsui_1367: Dsui_1367 - crcB protein, at 1,421,632 to 1,422,021
_1367
Dsui_1368: Dsui_1368 - hypothetical protein, at 1,422,030 to 1,422,866
_1368
Position (kb)
1419
1420
1421
1422 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1418.780 kb on - strand, within Dsui_1364 at 1418.816 kb on - strand, within Dsui_1364 at 1418.906 kb on + strand, within Dsui_1364 at 1418.906 kb on + strand at 1418.978 kb on + strand, within Dsui_1364 at 1419.049 kb on - strand, within Dsui_1364 at 1419.127 kb on - strand, within Dsui_1364 at 1419.159 kb on - strand, within Dsui_1364 at 1419.179 kb on + strand, within Dsui_1364 at 1419.289 kb on + strand at 1419.310 kb on + strand at 1419.340 kb on + strand at 1419.497 kb on - strand at 1419.605 kb on + strand at 1419.673 kb on + strand at 1419.676 kb on - strand at 1419.727 kb on + strand at 1419.751 kb on - strand at 1419.751 kb on - strand at 1421.588 kb on - strand at 1421.609 kb on + strand at 1421.609 kb on + strand at 1421.609 kb on + strand at 1421.609 kb on + strand at 1421.609 kb on + strand at 1421.617 kb on - strand at 1421.617 kb on - strand at 1421.624 kb on + strand at 1421.624 kb on - strand at 1421.632 kb on - strand at 1421.709 kb on + strand, within Dsui_1367 at 1421.721 kb on + strand, within Dsui_1367 at 1421.724 kb on - strand, within Dsui_1367 at 1421.724 kb on - strand at 1421.780 kb on + strand, within Dsui_1367 at 1421.814 kb on + strand, within Dsui_1367 at 1421.815 kb on - strand at 1421.826 kb on + strand, within Dsui_1367 at 1421.947 kb on - strand, within Dsui_1367 at 1422.015 kb on + strand at 1422.092 kb on - strand at 1422.103 kb on - strand at 1422.110 kb on - strand at 1422.152 kb on + strand, within Dsui_1368 at 1422.171 kb on - strand at 1422.175 kb on - strand at 1422.191 kb on - strand, within Dsui_1368 at 1422.217 kb on - strand, within Dsui_1368 at 1422.225 kb on - strand, within Dsui_1368 at 1422.239 kb on + strand, within Dsui_1368 at 1422.247 kb on - strand, within Dsui_1368 at 1422.350 kb on - strand at 1422.453 kb on + strand, within Dsui_1368 at 1422.466 kb on - strand, within Dsui_1368
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM remove 1,418,780 - Dsui_1364 0.66 +0.8 1,418,816 - Dsui_1364 0.68 +0.4 1,418,906 + Dsui_1364 0.72 -0.2 1,418,906 + +0.8 1,418,978 + Dsui_1364 0.76 -0.8 1,419,049 - Dsui_1364 0.79 -1.7 1,419,127 - Dsui_1364 0.83 -1.5 1,419,159 - Dsui_1364 0.85 -2.9 1,419,179 + Dsui_1364 0.86 -1.5 1,419,289 + +0.8 1,419,310 + -1.2 1,419,340 + +0.8 1,419,497 - -0.4 1,419,605 + -0.2 1,419,673 + -0.2 1,419,676 - +0.8 1,419,727 + -1.5 1,419,751 - -1.5 1,419,751 - +0.3 1,421,588 - +0.8 1,421,609 + +0.7 1,421,609 + -3.3 1,421,609 + -3.0 1,421,609 + +0.8 1,421,609 + -2.5 1,421,617 - +0.8 1,421,617 - +0.8 1,421,624 + -2.6 1,421,624 - -1.2 1,421,632 - -0.8 1,421,709 + Dsui_1367 0.20 -2.1 1,421,721 + Dsui_1367 0.23 -1.0 1,421,724 - Dsui_1367 0.24 -1.5 1,421,724 - +0.8 1,421,780 + Dsui_1367 0.38 -1.5 1,421,814 + Dsui_1367 0.47 -1.8 1,421,815 - -0.2 1,421,826 + Dsui_1367 0.50 -0.2 1,421,947 - Dsui_1367 0.81 +0.8 1,422,015 + -0.2 1,422,092 - -0.2 1,422,103 - +0.8 1,422,110 - -1.2 1,422,152 + Dsui_1368 0.15 -2.0 1,422,171 - +0.8 1,422,175 - -0.2 1,422,191 - Dsui_1368 0.19 +0.8 1,422,217 - Dsui_1368 0.22 +0.8 1,422,225 - Dsui_1368 0.23 +0.8 1,422,239 + Dsui_1368 0.25 -1.5 1,422,247 - Dsui_1368 0.26 -0.8 1,422,350 - +0.8 1,422,453 + Dsui_1368 0.51 +0.8 1,422,466 - Dsui_1368 0.52 -1.2
Or see this region's nucleotide sequence