Strain Fitness in Dechlorosoma suillum PS around Dsui_1351

Experiment: ALP with copper (II) chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1348 and Dsui_1349 are separated by 50 nucleotidesDsui_1349 and Dsui_1350 are separated by 135 nucleotidesDsui_1350 and Dsui_1351 are separated by 184 nucleotidesDsui_1351 and Dsui_1352 are separated by 83 nucleotidesDsui_1352 and Dsui_1353 are separated by 324 nucleotides Dsui_1348: Dsui_1348 - hemerythrin-like metal-binding domain-containing protein, at 1,404,962 to 1,405,372 _1348 Dsui_1349: Dsui_1349 - hypothetical protein, at 1,405,423 to 1,405,632 _1349 Dsui_1350: Dsui_1350 - hypothetical protein, at 1,405,768 to 1,405,977 _1350 Dsui_1351: Dsui_1351 - DNA/RNA helicase, superfamily II, at 1,406,162 to 1,408,087 _1351 Dsui_1352: Dsui_1352 - acyl dehydratase, at 1,408,171 to 1,408,602 _1352 Dsui_1353: Dsui_1353 - flagellar capping protein, at 1,408,927 to 1,409,817 _1353 Position (kb) 1406 1407 1408 1409Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1405.204 kb on - strand, within Dsui_1348at 1405.208 kb on + strand, within Dsui_1348at 1405.290 kb on + strand, within Dsui_1348at 1405.321 kb on + strand, within Dsui_1348at 1405.342 kb on + strandat 1405.456 kb on + strand, within Dsui_1349at 1405.492 kb on - strand, within Dsui_1349at 1405.494 kb on + strand, within Dsui_1349at 1405.530 kb on + strand, within Dsui_1349at 1405.565 kb on - strand, within Dsui_1349at 1405.573 kb on + strand, within Dsui_1349at 1405.676 kb on + strandat 1405.740 kb on + strandat 1405.740 kb on + strandat 1405.762 kb on + strandat 1405.763 kb on + strandat 1405.770 kb on - strandat 1405.771 kb on - strandat 1405.818 kb on - strandat 1405.881 kb on - strand, within Dsui_1350at 1405.989 kb on - strandat 1406.075 kb on + strandat 1406.112 kb on + strandat 1406.117 kb on + strandat 1406.119 kb on - strandat 1406.127 kb on + strandat 1406.127 kb on + strandat 1406.174 kb on + strandat 1406.432 kb on + strand, within Dsui_1351at 1406.432 kb on + strand, within Dsui_1351at 1406.753 kb on + strand, within Dsui_1351at 1406.788 kb on + strand, within Dsui_1351at 1406.817 kb on - strandat 1406.832 kb on + strand, within Dsui_1351at 1406.869 kb on + strand, within Dsui_1351at 1407.015 kb on - strandat 1407.354 kb on + strand, within Dsui_1351at 1407.495 kb on + strand, within Dsui_1351at 1407.498 kb on - strand, within Dsui_1351at 1407.522 kb on + strand, within Dsui_1351at 1407.759 kb on + strand, within Dsui_1351at 1407.768 kb on + strand, within Dsui_1351at 1407.789 kb on + strand, within Dsui_1351at 1407.817 kb on + strand, within Dsui_1351at 1407.976 kb on - strandat 1408.088 kb on + strandat 1408.328 kb on + strand, within Dsui_1352at 1408.361 kb on - strand, within Dsui_1352at 1408.479 kb on + strand, within Dsui_1352at 1408.481 kb on + strand, within Dsui_1352at 1408.487 kb on - strand, within Dsui_1352at 1408.489 kb on - strand, within Dsui_1352at 1408.569 kb on + strandat 1408.675 kb on + strandat 1408.836 kb on + strandat 1408.921 kb on + strandat 1409.000 kb on + strandat 1409.008 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM
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1,405,204 - Dsui_1348 0.59 -0.8
1,405,208 + Dsui_1348 0.60 -2.2
1,405,290 + Dsui_1348 0.80 -1.2
1,405,321 + Dsui_1348 0.87 -2.7
1,405,342 + -0.8
1,405,456 + Dsui_1349 0.16 +0.8
1,405,492 - Dsui_1349 0.33 +0.8
1,405,494 + Dsui_1349 0.34 -0.8
1,405,530 + Dsui_1349 0.51 -0.2
1,405,565 - Dsui_1349 0.68 -1.8
1,405,573 + Dsui_1349 0.71 -1.5
1,405,676 + -2.0
1,405,740 + -0.8
1,405,740 + -1.0
1,405,762 + -1.9
1,405,763 + -1.6
1,405,770 - -0.2
1,405,771 - -0.2
1,405,818 - +0.8
1,405,881 - Dsui_1350 0.54 +0.8
1,405,989 - +0.8
1,406,075 + -2.1
1,406,112 + -3.4
1,406,117 + -2.2
1,406,119 - -0.8
1,406,127 + -4.7
1,406,127 + -3.1
1,406,174 + -4.2
1,406,432 + Dsui_1351 0.14 -2.7
1,406,432 + Dsui_1351 0.14 -2.6
1,406,753 + Dsui_1351 0.31 -3.4
1,406,788 + Dsui_1351 0.33 -3.9
1,406,817 - -0.2
1,406,832 + Dsui_1351 0.35 -3.3
1,406,869 + Dsui_1351 0.37 -2.6
1,407,015 - +0.8
1,407,354 + Dsui_1351 0.62 -3.9
1,407,495 + Dsui_1351 0.69 -4.0
1,407,498 - Dsui_1351 0.69 +0.8
1,407,522 + Dsui_1351 0.71 -4.8
1,407,759 + Dsui_1351 0.83 -3.3
1,407,768 + Dsui_1351 0.83 -2.2
1,407,789 + Dsui_1351 0.84 -2.6
1,407,817 + Dsui_1351 0.86 -3.9
1,407,976 - +2.4
1,408,088 + -0.7
1,408,328 + Dsui_1352 0.36 +0.8
1,408,361 - Dsui_1352 0.44 -1.8
1,408,479 + Dsui_1352 0.71 -0.8
1,408,481 + Dsui_1352 0.72 -0.8
1,408,487 - Dsui_1352 0.73 -1.2
1,408,489 - Dsui_1352 0.74 -2.4
1,408,569 + -0.2
1,408,675 + -1.5
1,408,836 + -0.8
1,408,921 + -0.8
1,409,000 + -1.8
1,409,008 - -0.8

Or see this region's nucleotide sequence