Experiment: ALP with copper (II) chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1348 and Dsui_1349 are separated by 50 nucleotides Dsui_1349 and Dsui_1350 are separated by 135 nucleotides Dsui_1350 and Dsui_1351 are separated by 184 nucleotides Dsui_1351 and Dsui_1352 are separated by 83 nucleotides Dsui_1352 and Dsui_1353 are separated by 324 nucleotides
Dsui_1348: Dsui_1348 - hemerythrin-like metal-binding domain-containing protein, at 1,404,962 to 1,405,372
_1348
Dsui_1349: Dsui_1349 - hypothetical protein, at 1,405,423 to 1,405,632
_1349
Dsui_1350: Dsui_1350 - hypothetical protein, at 1,405,768 to 1,405,977
_1350
Dsui_1351: Dsui_1351 - DNA/RNA helicase, superfamily II, at 1,406,162 to 1,408,087
_1351
Dsui_1352: Dsui_1352 - acyl dehydratase, at 1,408,171 to 1,408,602
_1352
Dsui_1353: Dsui_1353 - flagellar capping protein, at 1,408,927 to 1,409,817
_1353
Position (kb)
1406
1407
1408
1409 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 1405.204 kb on - strand, within Dsui_1348 at 1405.208 kb on + strand, within Dsui_1348 at 1405.290 kb on + strand, within Dsui_1348 at 1405.321 kb on + strand, within Dsui_1348 at 1405.342 kb on + strand at 1405.456 kb on + strand, within Dsui_1349 at 1405.492 kb on - strand, within Dsui_1349 at 1405.494 kb on + strand, within Dsui_1349 at 1405.530 kb on + strand, within Dsui_1349 at 1405.565 kb on - strand, within Dsui_1349 at 1405.573 kb on + strand, within Dsui_1349 at 1405.676 kb on + strand at 1405.740 kb on + strand at 1405.740 kb on + strand at 1405.762 kb on + strand at 1405.763 kb on + strand at 1405.770 kb on - strand at 1405.771 kb on - strand at 1405.818 kb on - strand at 1405.881 kb on - strand, within Dsui_1350 at 1405.989 kb on - strand at 1406.075 kb on + strand at 1406.112 kb on + strand at 1406.117 kb on + strand at 1406.119 kb on - strand at 1406.127 kb on + strand at 1406.127 kb on + strand at 1406.174 kb on + strand at 1406.432 kb on + strand, within Dsui_1351 at 1406.432 kb on + strand, within Dsui_1351 at 1406.753 kb on + strand, within Dsui_1351 at 1406.788 kb on + strand, within Dsui_1351 at 1406.817 kb on - strand at 1406.832 kb on + strand, within Dsui_1351 at 1406.869 kb on + strand, within Dsui_1351 at 1407.015 kb on - strand at 1407.354 kb on + strand, within Dsui_1351 at 1407.495 kb on + strand, within Dsui_1351 at 1407.498 kb on - strand, within Dsui_1351 at 1407.522 kb on + strand, within Dsui_1351 at 1407.759 kb on + strand, within Dsui_1351 at 1407.768 kb on + strand, within Dsui_1351 at 1407.789 kb on + strand, within Dsui_1351 at 1407.817 kb on + strand, within Dsui_1351 at 1407.976 kb on - strand at 1408.088 kb on + strand at 1408.328 kb on + strand, within Dsui_1352 at 1408.361 kb on - strand, within Dsui_1352 at 1408.479 kb on + strand, within Dsui_1352 at 1408.481 kb on + strand, within Dsui_1352 at 1408.487 kb on - strand, within Dsui_1352 at 1408.489 kb on - strand, within Dsui_1352 at 1408.569 kb on + strand at 1408.675 kb on + strand at 1408.836 kb on + strand at 1408.921 kb on + strand at 1409.000 kb on + strand at 1409.008 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM remove 1,405,204 - Dsui_1348 0.59 -0.8 1,405,208 + Dsui_1348 0.60 -2.2 1,405,290 + Dsui_1348 0.80 -1.2 1,405,321 + Dsui_1348 0.87 -2.7 1,405,342 + -0.8 1,405,456 + Dsui_1349 0.16 +0.8 1,405,492 - Dsui_1349 0.33 +0.8 1,405,494 + Dsui_1349 0.34 -0.8 1,405,530 + Dsui_1349 0.51 -0.2 1,405,565 - Dsui_1349 0.68 -1.8 1,405,573 + Dsui_1349 0.71 -1.5 1,405,676 + -2.0 1,405,740 + -0.8 1,405,740 + -1.0 1,405,762 + -1.9 1,405,763 + -1.6 1,405,770 - -0.2 1,405,771 - -0.2 1,405,818 - +0.8 1,405,881 - Dsui_1350 0.54 +0.8 1,405,989 - +0.8 1,406,075 + -2.1 1,406,112 + -3.4 1,406,117 + -2.2 1,406,119 - -0.8 1,406,127 + -4.7 1,406,127 + -3.1 1,406,174 + -4.2 1,406,432 + Dsui_1351 0.14 -2.7 1,406,432 + Dsui_1351 0.14 -2.6 1,406,753 + Dsui_1351 0.31 -3.4 1,406,788 + Dsui_1351 0.33 -3.9 1,406,817 - -0.2 1,406,832 + Dsui_1351 0.35 -3.3 1,406,869 + Dsui_1351 0.37 -2.6 1,407,015 - +0.8 1,407,354 + Dsui_1351 0.62 -3.9 1,407,495 + Dsui_1351 0.69 -4.0 1,407,498 - Dsui_1351 0.69 +0.8 1,407,522 + Dsui_1351 0.71 -4.8 1,407,759 + Dsui_1351 0.83 -3.3 1,407,768 + Dsui_1351 0.83 -2.2 1,407,789 + Dsui_1351 0.84 -2.6 1,407,817 + Dsui_1351 0.86 -3.9 1,407,976 - +2.4 1,408,088 + -0.7 1,408,328 + Dsui_1352 0.36 +0.8 1,408,361 - Dsui_1352 0.44 -1.8 1,408,479 + Dsui_1352 0.71 -0.8 1,408,481 + Dsui_1352 0.72 -0.8 1,408,487 - Dsui_1352 0.73 -1.2 1,408,489 - Dsui_1352 0.74 -2.4 1,408,569 + -0.2 1,408,675 + -1.5 1,408,836 + -0.8 1,408,921 + -0.8 1,409,000 + -1.8 1,409,008 - -0.8
Or see this region's nucleotide sequence