Strain Fitness in Dechlorosoma suillum PS around Dsui_1305

Experiment: ALP with copper (II) chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1304 and Dsui_1305 are separated by 226 nucleotidesDsui_1305 and Dsui_1306 are separated by 189 nucleotides Dsui_1304: Dsui_1304 - cytochrome c553, at 1,366,043 to 1,366,684 _1304 Dsui_1305: Dsui_1305 - ribosome biogenesis GTP-binding protein YsxC/EngB, at 1,366,911 to 1,367,669 _1305 Dsui_1306: Dsui_1306 - delta-aminolevulinic acid dehydratase, at 1,367,859 to 1,368,869 _1306 Position (kb) 1366 1367 1368Strain fitness (log2 ratio) -3 -2 -1 0 1at 1365.949 kb on + strandat 1365.952 kb on + strandat 1365.954 kb on + strandat 1365.957 kb on - strandat 1366.049 kb on - strandat 1366.518 kb on + strand, within Dsui_1304at 1366.521 kb on - strand, within Dsui_1304at 1366.592 kb on - strand, within Dsui_1304at 1366.625 kb on - strandat 1366.628 kb on + strandat 1366.660 kb on - strandat 1366.661 kb on + strandat 1366.669 kb on - strandat 1366.669 kb on - strandat 1366.685 kb on + strandat 1366.694 kb on - strandat 1366.756 kb on + strandat 1366.764 kb on - strandat 1366.771 kb on + strandat 1366.800 kb on + strandat 1366.808 kb on - strandat 1366.812 kb on + strandat 1366.819 kb on + strandat 1366.820 kb on - strandat 1366.820 kb on - strandat 1366.820 kb on - strandat 1366.820 kb on - strandat 1366.825 kb on - strandat 1366.858 kb on + strandat 1366.873 kb on + strandat 1366.909 kb on + strandat 1367.600 kb on + strandat 1367.653 kb on - strandat 1367.653 kb on - strandat 1367.679 kb on + strandat 1367.680 kb on + strandat 1367.681 kb on + strandat 1367.686 kb on + strandat 1367.688 kb on - strandat 1367.743 kb on + strandat 1367.749 kb on + strandat 1367.759 kb on + strandat 1367.785 kb on + strandat 1367.786 kb on + strandat 1367.792 kb on + strandat 1367.795 kb on - strandat 1367.795 kb on - strandat 1367.803 kb on + strandat 1367.842 kb on + strandat 1367.842 kb on + strandat 1367.842 kb on + strandat 1367.842 kb on + strandat 1367.842 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM
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1,365,949 + -0.2
1,365,952 + -2.2
1,365,954 + +0.8
1,365,957 - -3.5
1,366,049 - -1.0
1,366,518 + Dsui_1304 0.74 +0.8
1,366,521 - Dsui_1304 0.74 +0.4
1,366,592 - Dsui_1304 0.86 +0.2
1,366,625 - +0.2
1,366,628 + -0.3
1,366,660 - +0.5
1,366,661 + -0.8
1,366,669 - -1.1
1,366,669 - -0.9
1,366,685 + -0.2
1,366,694 - -1.0
1,366,756 + -3.1
1,366,764 - -3.7
1,366,771 + -0.8
1,366,800 + -1.5
1,366,808 - -1.6
1,366,812 + -0.2
1,366,819 + +0.8
1,366,820 - -2.0
1,366,820 - -1.2
1,366,820 - -1.6
1,366,820 - -1.5
1,366,825 - -1.3
1,366,858 + -1.2
1,366,873 + -1.5
1,366,909 + -0.9
1,367,600 + +0.3
1,367,653 - +0.2
1,367,653 - +0.4
1,367,679 + -1.2
1,367,680 + +0.8
1,367,681 + -1.2
1,367,686 + +0.8
1,367,688 - -1.2
1,367,743 + +0.8
1,367,749 + -0.2
1,367,759 + -0.8
1,367,785 + -1.4
1,367,786 + +0.8
1,367,792 + -1.4
1,367,795 - -0.8
1,367,795 - -0.6
1,367,803 + -1.4
1,367,842 + -1.0
1,367,842 + -2.3
1,367,842 + -1.4
1,367,842 + -1.0
1,367,842 + -0.7

Or see this region's nucleotide sequence