Experiment: ALP with copper (II) chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1259 and Dsui_1260 are separated by 71 nucleotides Dsui_1260 and Dsui_1261 are separated by 82 nucleotides Dsui_1261 and Dsui_1262 are separated by 140 nucleotides
Dsui_1259: Dsui_1259 - Pirin-related protein, at 1,323,112 to 1,323,822
_1259
Dsui_1260: Dsui_1260 - multimeric flavodoxin WrbA, at 1,323,894 to 1,324,469
_1260
Dsui_1261: Dsui_1261 - response regulator containing a CheY-like receiver domain and a GGDEF domain, at 1,324,552 to 1,325,352
_1261
Dsui_1262: Dsui_1262 - TRAP transporter, DctM subunit, at 1,325,493 to 1,326,959
_1262
Position (kb)
1324
1325
1326 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1323.655 kb on - strand at 1323.816 kb on + strand at 1323.823 kb on + strand at 1323.833 kb on - strand at 1323.875 kb on - strand at 1323.887 kb on - strand at 1323.937 kb on + strand at 1324.201 kb on + strand, within Dsui_1260 at 1324.267 kb on + strand, within Dsui_1260 at 1324.275 kb on - strand at 1324.300 kb on - strand, within Dsui_1260 at 1324.311 kb on + strand, within Dsui_1260 at 1324.319 kb on - strand at 1324.349 kb on - strand, within Dsui_1260 at 1324.352 kb on + strand, within Dsui_1260 at 1324.435 kb on + strand at 1324.497 kb on - strand at 1324.509 kb on + strand at 1324.526 kb on - strand at 1324.548 kb on - strand at 1324.687 kb on + strand, within Dsui_1261 at 1324.696 kb on + strand, within Dsui_1261 at 1324.767 kb on + strand, within Dsui_1261 at 1324.767 kb on + strand, within Dsui_1261 at 1324.775 kb on - strand, within Dsui_1261 at 1324.775 kb on - strand, within Dsui_1261 at 1324.775 kb on - strand, within Dsui_1261 at 1324.802 kb on - strand, within Dsui_1261 at 1324.926 kb on - strand at 1324.985 kb on + strand, within Dsui_1261 at 1324.993 kb on - strand, within Dsui_1261 at 1325.069 kb on + strand, within Dsui_1261 at 1325.098 kb on - strand, within Dsui_1261 at 1325.111 kb on + strand, within Dsui_1261 at 1325.134 kb on - strand at 1325.218 kb on + strand, within Dsui_1261 at 1325.316 kb on + strand at 1325.316 kb on + strand at 1325.359 kb on - strand at 1325.364 kb on - strand at 1325.473 kb on + strand at 1325.507 kb on + strand at 1325.529 kb on + strand at 1325.537 kb on - strand at 1325.550 kb on + strand at 1325.550 kb on + strand at 1325.769 kb on + strand, within Dsui_1262 at 1325.806 kb on + strand, within Dsui_1262 at 1325.848 kb on - strand, within Dsui_1262 at 1325.911 kb on - strand, within Dsui_1262 at 1326.071 kb on + strand at 1326.071 kb on - strand, within Dsui_1262 at 1326.152 kb on + strand, within Dsui_1262 at 1326.161 kb on - strand, within Dsui_1262 at 1326.206 kb on - strand, within Dsui_1262 at 1326.254 kb on + strand at 1326.262 kb on - strand, within Dsui_1262 at 1326.325 kb on - strand, within Dsui_1262
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM remove 1,323,655 - +0.8 1,323,816 + -1.2 1,323,823 + -0.2 1,323,833 - -0.2 1,323,875 - -0.2 1,323,887 - -0.2 1,323,937 + +0.8 1,324,201 + Dsui_1260 0.53 -1.5 1,324,267 + Dsui_1260 0.65 +2.4 1,324,275 - +0.8 1,324,300 - Dsui_1260 0.70 -1.5 1,324,311 + Dsui_1260 0.72 +0.8 1,324,319 - +0.8 1,324,349 - Dsui_1260 0.79 +0.8 1,324,352 + Dsui_1260 0.80 -1.5 1,324,435 + -0.2 1,324,497 - -1.2 1,324,509 + -1.5 1,324,526 - +0.8 1,324,548 - -0.2 1,324,687 + Dsui_1261 0.17 -1.3 1,324,696 + Dsui_1261 0.18 -1.4 1,324,767 + Dsui_1261 0.27 +0.6 1,324,767 + Dsui_1261 0.27 -0.8 1,324,775 - Dsui_1261 0.28 -3.7 1,324,775 - Dsui_1261 0.28 -1.5 1,324,775 - Dsui_1261 0.28 -2.4 1,324,802 - Dsui_1261 0.31 +0.8 1,324,926 - +0.8 1,324,985 + Dsui_1261 0.54 -0.7 1,324,993 - Dsui_1261 0.55 -2.7 1,325,069 + Dsui_1261 0.65 -0.8 1,325,098 - Dsui_1261 0.68 -0.2 1,325,111 + Dsui_1261 0.70 -0.8 1,325,134 - +0.8 1,325,218 + Dsui_1261 0.83 -1.9 1,325,316 + -0.6 1,325,316 + -1.4 1,325,359 - +0.8 1,325,364 - -0.2 1,325,473 + +0.8 1,325,507 + +0.8 1,325,529 + -0.8 1,325,537 - -2.3 1,325,550 + -0.2 1,325,550 + -0.2 1,325,769 + Dsui_1262 0.19 +0.8 1,325,806 + Dsui_1262 0.21 +0.8 1,325,848 - Dsui_1262 0.24 -0.6 1,325,911 - Dsui_1262 0.28 -0.5 1,326,071 + +0.8 1,326,071 - Dsui_1262 0.39 -0.8 1,326,152 + Dsui_1262 0.45 -0.8 1,326,161 - Dsui_1262 0.46 +0.8 1,326,206 - Dsui_1262 0.49 -0.2 1,326,254 + -0.2 1,326,262 - Dsui_1262 0.52 -0.9 1,326,325 - Dsui_1262 0.57 -0.2
Or see this region's nucleotide sequence