Experiment: ALP with copper (II) chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1254 and Dsui_1255 are separated by 53 nucleotides Dsui_1255 and Dsui_1256 are separated by 4 nucleotides Dsui_1256 and Dsui_1257 are separated by 45 nucleotides Dsui_1257 and Dsui_1258 are separated by 38 nucleotides
Dsui_1254: Dsui_1254 - TonB-dependent copper receptor, at 1,315,724 to 1,317,742
_1254
Dsui_1255: Dsui_1255 - mannose-6-phosphate isomerase, at 1,317,796 to 1,318,281
_1255
Dsui_1256: Dsui_1256 - hypothetical protein, at 1,318,286 to 1,318,540
_1256
Dsui_1257: Dsui_1257 - DNA-directed DNA polymerase III PolC, at 1,318,586 to 1,322,041
_1257
Dsui_1258: Dsui_1258 - transcriptional regulator, at 1,322,080 to 1,322,991
_1258
Position (kb)
1318
1319
1320
1321
1322
1323 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1317.589 kb on - strand at 1317.589 kb on - strand at 1317.594 kb on - strand at 1317.599 kb on - strand at 1317.619 kb on + strand at 1317.627 kb on - strand at 1317.627 kb on - strand at 1317.645 kb on - strand at 1317.648 kb on + strand at 1317.763 kb on - strand at 1317.773 kb on - strand at 1317.823 kb on + strand at 1317.856 kb on - strand, within Dsui_1255 at 1317.916 kb on + strand, within Dsui_1255 at 1317.928 kb on + strand, within Dsui_1255 at 1317.936 kb on - strand, within Dsui_1255 at 1318.004 kb on - strand, within Dsui_1255 at 1318.025 kb on - strand, within Dsui_1255 at 1318.057 kb on + strand at 1318.083 kb on + strand, within Dsui_1255 at 1318.083 kb on - strand, within Dsui_1255 at 1318.125 kb on - strand, within Dsui_1255 at 1318.140 kb on - strand, within Dsui_1255 at 1318.151 kb on - strand, within Dsui_1255 at 1318.285 kb on - strand at 1318.315 kb on - strand, within Dsui_1256 at 1318.359 kb on - strand, within Dsui_1256 at 1318.488 kb on - strand, within Dsui_1256 at 1318.502 kb on - strand, within Dsui_1256 at 1318.549 kb on + strand at 1318.554 kb on + strand at 1318.557 kb on - strand at 1318.557 kb on - strand at 1322.188 kb on - strand, within Dsui_1258 at 1322.338 kb on + strand, within Dsui_1258 at 1322.387 kb on + strand, within Dsui_1258 at 1322.401 kb on - strand, within Dsui_1258 at 1322.413 kb on - strand, within Dsui_1258 at 1322.495 kb on - strand, within Dsui_1258 at 1322.495 kb on - strand, within Dsui_1258 at 1322.637 kb on - strand, within Dsui_1258 at 1322.663 kb on + strand at 1322.663 kb on + strand, within Dsui_1258 at 1322.671 kb on - strand, within Dsui_1258 at 1322.684 kb on - strand, within Dsui_1258 at 1322.702 kb on + strand, within Dsui_1258 at 1322.707 kb on - strand, within Dsui_1258 at 1322.717 kb on - strand, within Dsui_1258 at 1322.786 kb on + strand at 1322.847 kb on + strand at 1322.855 kb on - strand, within Dsui_1258 at 1322.865 kb on - strand, within Dsui_1258 at 1322.890 kb on - strand, within Dsui_1258
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM remove 1,317,589 - +0.8 1,317,589 - -0.8 1,317,594 - +0.8 1,317,599 - -0.2 1,317,619 + -1.2 1,317,627 - +0.8 1,317,627 - +0.8 1,317,645 - -2.0 1,317,648 + -0.8 1,317,763 - -2.2 1,317,773 - -2.9 1,317,823 + -0.2 1,317,856 - Dsui_1255 0.12 -2.1 1,317,916 + Dsui_1255 0.25 -1.5 1,317,928 + Dsui_1255 0.27 -1.8 1,317,936 - Dsui_1255 0.29 -0.5 1,318,004 - Dsui_1255 0.43 -0.8 1,318,025 - Dsui_1255 0.47 -2.0 1,318,057 + +0.8 1,318,083 + Dsui_1255 0.59 -2.2 1,318,083 - Dsui_1255 0.59 -1.1 1,318,125 - Dsui_1255 0.68 -1.5 1,318,140 - Dsui_1255 0.71 -1.5 1,318,151 - Dsui_1255 0.73 -0.6 1,318,285 - -0.5 1,318,315 - Dsui_1256 0.11 -1.0 1,318,359 - Dsui_1256 0.29 -0.3 1,318,488 - Dsui_1256 0.79 -1.0 1,318,502 - Dsui_1256 0.85 -0.6 1,318,549 + -1.2 1,318,554 + -0.8 1,318,557 - -0.2 1,318,557 - -3.1 1,322,188 - Dsui_1258 0.12 -1.1 1,322,338 + Dsui_1258 0.28 +0.8 1,322,387 + Dsui_1258 0.34 -0.2 1,322,401 - Dsui_1258 0.35 -1.5 1,322,413 - Dsui_1258 0.37 -1.7 1,322,495 - Dsui_1258 0.46 -0.6 1,322,495 - Dsui_1258 0.46 -2.0 1,322,637 - Dsui_1258 0.61 -1.7 1,322,663 + +0.8 1,322,663 + Dsui_1258 0.64 -2.7 1,322,671 - Dsui_1258 0.65 -1.2 1,322,684 - Dsui_1258 0.66 -1.4 1,322,702 + Dsui_1258 0.68 +0.8 1,322,707 - Dsui_1258 0.69 -1.8 1,322,717 - Dsui_1258 0.70 -1.9 1,322,786 + +0.8 1,322,847 + +0.8 1,322,855 - Dsui_1258 0.85 -0.7 1,322,865 - Dsui_1258 0.86 -1.3 1,322,890 - Dsui_1258 0.89 -1.2
Or see this region's nucleotide sequence