Experiment: ALP with copper (II) chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1191 and Dsui_1192 are separated by 132 nucleotides Dsui_1192 and Dsui_1193 are separated by 175 nucleotides Dsui_1193 and Dsui_1194 are separated by 48 nucleotides Dsui_1194 and Dsui_1195 overlap by 1 nucleotides Dsui_1195 and Dsui_1196 overlap by 4 nucleotides
Dsui_1191: Dsui_1191 - type IV pilus secretin PilQ/competence protein, at 1,243,206 to 1,245,380
_1191
Dsui_1192: Dsui_1192 - tRNA-Met, at 1,245,513 to 1,245,589
_1192
Dsui_1193: Dsui_1193 - hypothetical protein, at 1,245,765 to 1,246,151
_1193
Dsui_1194: Dsui_1194 - tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB, at 1,246,200 to 1,247,540
_1194
Dsui_1195: Dsui_1195 - phosphate starvation-inducible protein PhoH, predicted ATPase, at 1,247,540 to 1,248,514
_1195
Dsui_1196: Dsui_1196 - metalloprotein, YbeY/UPF0054 family, at 1,248,511 to 1,248,969
_1196
Position (kb)
1246
1247
1248 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1245.247 kb on + strand at 1245.255 kb on - strand at 1245.255 kb on - strand at 1245.272 kb on + strand at 1245.272 kb on + strand at 1245.272 kb on + strand at 1245.280 kb on - strand at 1245.280 kb on - strand at 1245.299 kb on + strand at 1245.309 kb on + strand at 1245.309 kb on + strand at 1245.309 kb on + strand at 1245.317 kb on - strand at 1245.317 kb on - strand at 1245.317 kb on - strand at 1245.319 kb on + strand at 1245.319 kb on + strand at 1245.319 kb on + strand at 1245.327 kb on - strand at 1245.327 kb on - strand at 1245.327 kb on - strand at 1245.327 kb on - strand at 1245.327 kb on - strand at 1245.382 kb on - strand at 1245.393 kb on + strand at 1245.408 kb on - strand at 1245.413 kb on + strand at 1245.421 kb on - strand at 1245.449 kb on + strand at 1245.449 kb on + strand at 1245.452 kb on - strand at 1245.452 kb on - strand at 1245.457 kb on - strand at 1245.662 kb on - strand at 1245.704 kb on - strand at 1245.720 kb on - strand at 1245.731 kb on + strand at 1245.859 kb on - strand, within Dsui_1193 at 1245.866 kb on - strand, within Dsui_1193 at 1245.915 kb on - strand, within Dsui_1193 at 1245.967 kb on + strand, within Dsui_1193 at 1245.976 kb on + strand, within Dsui_1193 at 1245.981 kb on - strand, within Dsui_1193 at 1246.000 kb on - strand, within Dsui_1193 at 1246.058 kb on + strand, within Dsui_1193 at 1246.120 kb on + strand at 1246.132 kb on + strand at 1246.145 kb on - strand at 1246.149 kb on - strand at 1246.156 kb on + strand at 1246.164 kb on - strand at 1246.164 kb on - strand at 1246.182 kb on + strand at 1246.182 kb on + strand at 1246.182 kb on + strand at 1246.182 kb on + strand at 1246.182 kb on + strand at 1246.190 kb on - strand at 1246.190 kb on - strand at 1246.192 kb on + strand at 1246.198 kb on - strand at 1246.217 kb on + strand at 1246.219 kb on - strand at 1246.252 kb on + strand at 1246.270 kb on - strand at 1246.280 kb on - strand at 1246.283 kb on + strand at 1246.283 kb on + strand at 1246.283 kb on + strand at 1246.291 kb on - strand at 1246.317 kb on - strand at 1246.348 kb on - strand, within Dsui_1194 at 1246.367 kb on + strand, within Dsui_1194 at 1246.367 kb on + strand, within Dsui_1194 at 1246.616 kb on + strand, within Dsui_1194 at 1246.624 kb on - strand at 1246.628 kb on + strand, within Dsui_1194 at 1246.636 kb on - strand, within Dsui_1194 at 1246.782 kb on - strand, within Dsui_1194 at 1246.899 kb on + strand, within Dsui_1194 at 1246.909 kb on + strand, within Dsui_1194 at 1246.917 kb on - strand, within Dsui_1194 at 1246.917 kb on - strand, within Dsui_1194 at 1246.951 kb on + strand, within Dsui_1194 at 1246.980 kb on - strand, within Dsui_1194 at 1246.986 kb on - strand, within Dsui_1194 at 1246.992 kb on + strand, within Dsui_1194 at 1246.997 kb on + strand, within Dsui_1194 at 1247.002 kb on + strand, within Dsui_1194 at 1247.072 kb on + strand, within Dsui_1194 at 1247.104 kb on + strand, within Dsui_1194 at 1247.183 kb on - strand, within Dsui_1194 at 1247.213 kb on - strand, within Dsui_1194 at 1247.354 kb on - strand at 1247.409 kb on + strand at 1247.468 kb on + strand at 1247.608 kb on + strand at 1247.646 kb on + strand, within Dsui_1195 at 1247.713 kb on + strand, within Dsui_1195 at 1247.921 kb on - strand, within Dsui_1195 at 1247.922 kb on - strand, within Dsui_1195 at 1247.923 kb on - strand, within Dsui_1195 at 1247.969 kb on + strand, within Dsui_1195 at 1248.016 kb on + strand, within Dsui_1195 at 1248.026 kb on - strand, within Dsui_1195 at 1248.035 kb on + strand, within Dsui_1195 at 1248.222 kb on + strand, within Dsui_1195 at 1248.257 kb on - strand, within Dsui_1195 at 1248.268 kb on - strand, within Dsui_1195 at 1248.268 kb on - strand, within Dsui_1195 at 1248.358 kb on + strand, within Dsui_1195 at 1248.361 kb on - strand, within Dsui_1195 at 1248.410 kb on + strand, within Dsui_1195 at 1248.479 kb on + strand at 1248.515 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM remove 1,245,247 + -1.0 1,245,255 - -1.4 1,245,255 - -1.1 1,245,272 + -1.1 1,245,272 + -0.6 1,245,272 + -0.8 1,245,280 - -2.0 1,245,280 - -3.4 1,245,299 + -2.0 1,245,309 + -1.2 1,245,309 + -1.0 1,245,309 + -1.1 1,245,317 - -0.6 1,245,317 - -1.4 1,245,317 - -3.0 1,245,319 + -1.4 1,245,319 + -1.1 1,245,319 + -0.8 1,245,327 - -2.3 1,245,327 - -1.7 1,245,327 - -0.9 1,245,327 - -2.0 1,245,327 - -1.3 1,245,382 - -2.6 1,245,393 + -1.2 1,245,408 - -0.3 1,245,413 + -0.7 1,245,421 - -1.8 1,245,449 + -1.7 1,245,449 + -1.3 1,245,452 - -1.6 1,245,452 - -2.8 1,245,457 - -1.4 1,245,662 - +0.7 1,245,704 - -0.3 1,245,720 - +0.7 1,245,731 + +0.8 1,245,859 - Dsui_1193 0.24 -1.9 1,245,866 - Dsui_1193 0.26 -0.3 1,245,915 - Dsui_1193 0.39 +0.7 1,245,967 + Dsui_1193 0.52 -4.9 1,245,976 + Dsui_1193 0.55 -1.4 1,245,981 - Dsui_1193 0.56 -1.9 1,246,000 - Dsui_1193 0.61 -0.3 1,246,058 + Dsui_1193 0.76 -1.0 1,246,120 + -1.5 1,246,132 + -0.3 1,246,145 - -2.1 1,246,149 - +0.7 1,246,156 + -0.9 1,246,164 - -1.3 1,246,164 - -0.3 1,246,182 + -2.4 1,246,182 + -1.6 1,246,182 + -0.8 1,246,182 + -1.5 1,246,182 + -1.7 1,246,190 - -0.9 1,246,190 - -0.9 1,246,192 + -1.7 1,246,198 - -1.3 1,246,217 + -2.4 1,246,219 - -0.9 1,246,252 + -2.5 1,246,270 - -1.9 1,246,280 - -0.9 1,246,283 + -3.4 1,246,283 + -5.4 1,246,283 + -2.6 1,246,291 - -1.3 1,246,317 - -0.9 1,246,348 - Dsui_1194 0.11 -0.3 1,246,367 + Dsui_1194 0.12 -0.7 1,246,367 + Dsui_1194 0.12 -2.1 1,246,616 + Dsui_1194 0.31 -3.3 1,246,624 - +0.7 1,246,628 + Dsui_1194 0.32 -2.1 1,246,636 - Dsui_1194 0.33 +0.7 1,246,782 - Dsui_1194 0.43 +0.7 1,246,899 + Dsui_1194 0.52 -2.8 1,246,909 + Dsui_1194 0.53 -2.1 1,246,917 - Dsui_1194 0.53 +0.7 1,246,917 - Dsui_1194 0.53 +0.7 1,246,951 + Dsui_1194 0.56 -3.0 1,246,980 - Dsui_1194 0.58 -0.9 1,246,986 - Dsui_1194 0.59 +0.7 1,246,992 + Dsui_1194 0.59 -2.3 1,246,997 + Dsui_1194 0.59 -4.3 1,247,002 + Dsui_1194 0.60 -2.3 1,247,072 + Dsui_1194 0.65 -3.8 1,247,104 + Dsui_1194 0.67 -2.7 1,247,183 - Dsui_1194 0.73 -0.9 1,247,213 - Dsui_1194 0.76 +0.7 1,247,354 - +0.7 1,247,409 + -3.1 1,247,468 + -1.5 1,247,608 + -0.7 1,247,646 + Dsui_1195 0.11 -2.8 1,247,713 + Dsui_1195 0.18 -1.8 1,247,921 - Dsui_1195 0.39 -0.9 1,247,922 - Dsui_1195 0.39 -0.3 1,247,923 - Dsui_1195 0.39 -2.5 1,247,969 + Dsui_1195 0.44 -2.3 1,248,016 + Dsui_1195 0.49 -2.0 1,248,026 - Dsui_1195 0.50 +0.7 1,248,035 + Dsui_1195 0.51 -1.1 1,248,222 + Dsui_1195 0.70 -4.1 1,248,257 - Dsui_1195 0.74 +0.7 1,248,268 - Dsui_1195 0.75 -1.9 1,248,268 - Dsui_1195 0.75 +0.7 1,248,358 + Dsui_1195 0.84 -2.2 1,248,361 - Dsui_1195 0.84 +0.7 1,248,410 + Dsui_1195 0.89 -1.6 1,248,479 + -1.2 1,248,515 - +0.7
Or see this region's nucleotide sequence