Strain Fitness in Dechlorosoma suillum PS around Dsui_1194

Experiment: ALP with copper (II) chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1191 and Dsui_1192 are separated by 132 nucleotidesDsui_1192 and Dsui_1193 are separated by 175 nucleotidesDsui_1193 and Dsui_1194 are separated by 48 nucleotidesDsui_1194 and Dsui_1195 overlap by 1 nucleotidesDsui_1195 and Dsui_1196 overlap by 4 nucleotides Dsui_1191: Dsui_1191 - type IV pilus secretin PilQ/competence protein, at 1,243,206 to 1,245,380 _1191 Dsui_1192: Dsui_1192 - tRNA-Met, at 1,245,513 to 1,245,589 _1192 Dsui_1193: Dsui_1193 - hypothetical protein, at 1,245,765 to 1,246,151 _1193 Dsui_1194: Dsui_1194 - tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB, at 1,246,200 to 1,247,540 _1194 Dsui_1195: Dsui_1195 - phosphate starvation-inducible protein PhoH, predicted ATPase, at 1,247,540 to 1,248,514 _1195 Dsui_1196: Dsui_1196 - metalloprotein, YbeY/UPF0054 family, at 1,248,511 to 1,248,969 _1196 Position (kb) 1246 1247 1248Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1245.247 kb on + strandat 1245.255 kb on - strandat 1245.255 kb on - strandat 1245.272 kb on + strandat 1245.272 kb on + strandat 1245.272 kb on + strandat 1245.280 kb on - strandat 1245.280 kb on - strandat 1245.299 kb on + strandat 1245.309 kb on + strandat 1245.309 kb on + strandat 1245.309 kb on + strandat 1245.317 kb on - strandat 1245.317 kb on - strandat 1245.317 kb on - strandat 1245.319 kb on + strandat 1245.319 kb on + strandat 1245.319 kb on + strandat 1245.327 kb on - strandat 1245.327 kb on - strandat 1245.327 kb on - strandat 1245.327 kb on - strandat 1245.327 kb on - strandat 1245.382 kb on - strandat 1245.393 kb on + strandat 1245.408 kb on - strandat 1245.413 kb on + strandat 1245.421 kb on - strandat 1245.449 kb on + strandat 1245.449 kb on + strandat 1245.452 kb on - strandat 1245.452 kb on - strandat 1245.457 kb on - strandat 1245.662 kb on - strandat 1245.704 kb on - strandat 1245.720 kb on - strandat 1245.731 kb on + strandat 1245.859 kb on - strand, within Dsui_1193at 1245.866 kb on - strand, within Dsui_1193at 1245.915 kb on - strand, within Dsui_1193at 1245.967 kb on + strand, within Dsui_1193at 1245.976 kb on + strand, within Dsui_1193at 1245.981 kb on - strand, within Dsui_1193at 1246.000 kb on - strand, within Dsui_1193at 1246.058 kb on + strand, within Dsui_1193at 1246.120 kb on + strandat 1246.132 kb on + strandat 1246.145 kb on - strandat 1246.149 kb on - strandat 1246.156 kb on + strandat 1246.164 kb on - strandat 1246.164 kb on - strandat 1246.182 kb on + strandat 1246.182 kb on + strandat 1246.182 kb on + strandat 1246.182 kb on + strandat 1246.182 kb on + strandat 1246.190 kb on - strandat 1246.190 kb on - strandat 1246.192 kb on + strandat 1246.198 kb on - strandat 1246.217 kb on + strandat 1246.219 kb on - strandat 1246.252 kb on + strandat 1246.270 kb on - strandat 1246.280 kb on - strandat 1246.283 kb on + strandat 1246.283 kb on + strandat 1246.283 kb on + strandat 1246.291 kb on - strandat 1246.317 kb on - strandat 1246.348 kb on - strand, within Dsui_1194at 1246.367 kb on + strand, within Dsui_1194at 1246.367 kb on + strand, within Dsui_1194at 1246.616 kb on + strand, within Dsui_1194at 1246.624 kb on - strandat 1246.628 kb on + strand, within Dsui_1194at 1246.636 kb on - strand, within Dsui_1194at 1246.782 kb on - strand, within Dsui_1194at 1246.899 kb on + strand, within Dsui_1194at 1246.909 kb on + strand, within Dsui_1194at 1246.917 kb on - strand, within Dsui_1194at 1246.917 kb on - strand, within Dsui_1194at 1246.951 kb on + strand, within Dsui_1194at 1246.980 kb on - strand, within Dsui_1194at 1246.986 kb on - strand, within Dsui_1194at 1246.992 kb on + strand, within Dsui_1194at 1246.997 kb on + strand, within Dsui_1194at 1247.002 kb on + strand, within Dsui_1194at 1247.072 kb on + strand, within Dsui_1194at 1247.104 kb on + strand, within Dsui_1194at 1247.183 kb on - strand, within Dsui_1194at 1247.213 kb on - strand, within Dsui_1194at 1247.354 kb on - strandat 1247.409 kb on + strandat 1247.468 kb on + strandat 1247.608 kb on + strandat 1247.646 kb on + strand, within Dsui_1195at 1247.713 kb on + strand, within Dsui_1195at 1247.921 kb on - strand, within Dsui_1195at 1247.922 kb on - strand, within Dsui_1195at 1247.923 kb on - strand, within Dsui_1195at 1247.969 kb on + strand, within Dsui_1195at 1248.016 kb on + strand, within Dsui_1195at 1248.026 kb on - strand, within Dsui_1195at 1248.035 kb on + strand, within Dsui_1195at 1248.222 kb on + strand, within Dsui_1195at 1248.257 kb on - strand, within Dsui_1195at 1248.268 kb on - strand, within Dsui_1195at 1248.268 kb on - strand, within Dsui_1195at 1248.358 kb on + strand, within Dsui_1195at 1248.361 kb on - strand, within Dsui_1195at 1248.410 kb on + strand, within Dsui_1195at 1248.479 kb on + strandat 1248.515 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM
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1,245,247 + -1.0
1,245,255 - -1.4
1,245,255 - -1.1
1,245,272 + -1.1
1,245,272 + -0.6
1,245,272 + -0.8
1,245,280 - -2.0
1,245,280 - -3.4
1,245,299 + -2.0
1,245,309 + -1.2
1,245,309 + -1.0
1,245,309 + -1.1
1,245,317 - -0.6
1,245,317 - -1.4
1,245,317 - -3.0
1,245,319 + -1.4
1,245,319 + -1.1
1,245,319 + -0.8
1,245,327 - -2.3
1,245,327 - -1.7
1,245,327 - -0.9
1,245,327 - -2.0
1,245,327 - -1.3
1,245,382 - -2.6
1,245,393 + -1.2
1,245,408 - -0.3
1,245,413 + -0.7
1,245,421 - -1.8
1,245,449 + -1.7
1,245,449 + -1.3
1,245,452 - -1.6
1,245,452 - -2.8
1,245,457 - -1.4
1,245,662 - +0.7
1,245,704 - -0.3
1,245,720 - +0.7
1,245,731 + +0.8
1,245,859 - Dsui_1193 0.24 -1.9
1,245,866 - Dsui_1193 0.26 -0.3
1,245,915 - Dsui_1193 0.39 +0.7
1,245,967 + Dsui_1193 0.52 -4.9
1,245,976 + Dsui_1193 0.55 -1.4
1,245,981 - Dsui_1193 0.56 -1.9
1,246,000 - Dsui_1193 0.61 -0.3
1,246,058 + Dsui_1193 0.76 -1.0
1,246,120 + -1.5
1,246,132 + -0.3
1,246,145 - -2.1
1,246,149 - +0.7
1,246,156 + -0.9
1,246,164 - -1.3
1,246,164 - -0.3
1,246,182 + -2.4
1,246,182 + -1.6
1,246,182 + -0.8
1,246,182 + -1.5
1,246,182 + -1.7
1,246,190 - -0.9
1,246,190 - -0.9
1,246,192 + -1.7
1,246,198 - -1.3
1,246,217 + -2.4
1,246,219 - -0.9
1,246,252 + -2.5
1,246,270 - -1.9
1,246,280 - -0.9
1,246,283 + -3.4
1,246,283 + -5.4
1,246,283 + -2.6
1,246,291 - -1.3
1,246,317 - -0.9
1,246,348 - Dsui_1194 0.11 -0.3
1,246,367 + Dsui_1194 0.12 -0.7
1,246,367 + Dsui_1194 0.12 -2.1
1,246,616 + Dsui_1194 0.31 -3.3
1,246,624 - +0.7
1,246,628 + Dsui_1194 0.32 -2.1
1,246,636 - Dsui_1194 0.33 +0.7
1,246,782 - Dsui_1194 0.43 +0.7
1,246,899 + Dsui_1194 0.52 -2.8
1,246,909 + Dsui_1194 0.53 -2.1
1,246,917 - Dsui_1194 0.53 +0.7
1,246,917 - Dsui_1194 0.53 +0.7
1,246,951 + Dsui_1194 0.56 -3.0
1,246,980 - Dsui_1194 0.58 -0.9
1,246,986 - Dsui_1194 0.59 +0.7
1,246,992 + Dsui_1194 0.59 -2.3
1,246,997 + Dsui_1194 0.59 -4.3
1,247,002 + Dsui_1194 0.60 -2.3
1,247,072 + Dsui_1194 0.65 -3.8
1,247,104 + Dsui_1194 0.67 -2.7
1,247,183 - Dsui_1194 0.73 -0.9
1,247,213 - Dsui_1194 0.76 +0.7
1,247,354 - +0.7
1,247,409 + -3.1
1,247,468 + -1.5
1,247,608 + -0.7
1,247,646 + Dsui_1195 0.11 -2.8
1,247,713 + Dsui_1195 0.18 -1.8
1,247,921 - Dsui_1195 0.39 -0.9
1,247,922 - Dsui_1195 0.39 -0.3
1,247,923 - Dsui_1195 0.39 -2.5
1,247,969 + Dsui_1195 0.44 -2.3
1,248,016 + Dsui_1195 0.49 -2.0
1,248,026 - Dsui_1195 0.50 +0.7
1,248,035 + Dsui_1195 0.51 -1.1
1,248,222 + Dsui_1195 0.70 -4.1
1,248,257 - Dsui_1195 0.74 +0.7
1,248,268 - Dsui_1195 0.75 -1.9
1,248,268 - Dsui_1195 0.75 +0.7
1,248,358 + Dsui_1195 0.84 -2.2
1,248,361 - Dsui_1195 0.84 +0.7
1,248,410 + Dsui_1195 0.89 -1.6
1,248,479 + -1.2
1,248,515 - +0.7

Or see this region's nucleotide sequence