Strain Fitness in Dechlorosoma suillum PS around Dsui_1155

Experiment: ALP with copper (II) chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1154 and Dsui_1155 are separated by 6 nucleotidesDsui_1155 and Dsui_1156 are separated by 51 nucleotides Dsui_1154: Dsui_1154 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 1,209,138 to 1,210,613 _1154 Dsui_1155: Dsui_1155 - methionyl-tRNA formyltransferase, at 1,210,620 to 1,212,353 _1155 Dsui_1156: Dsui_1156 - putative divalent heavy-metal cations transporter, at 1,212,405 to 1,213,310 _1156 Position (kb) 1210 1211 1212 1213Strain fitness (log2 ratio) -3 -2 -1 0 1at 1209.717 kb on + strandat 1209.724 kb on + strand, within Dsui_1154at 1209.814 kb on + strand, within Dsui_1154at 1210.009 kb on + strand, within Dsui_1154at 1210.009 kb on + strand, within Dsui_1154at 1210.009 kb on + strandat 1210.037 kb on - strand, within Dsui_1154at 1210.044 kb on + strand, within Dsui_1154at 1210.186 kb on - strand, within Dsui_1154at 1210.283 kb on + strand, within Dsui_1154at 1210.366 kb on - strand, within Dsui_1154at 1210.368 kb on + strand, within Dsui_1154at 1210.411 kb on + strand, within Dsui_1154at 1210.639 kb on + strandat 1210.639 kb on + strandat 1210.647 kb on - strandat 1210.647 kb on - strandat 1210.678 kb on + strandat 1210.709 kb on + strandat 1210.928 kb on - strand, within Dsui_1155at 1210.941 kb on + strand, within Dsui_1155at 1210.966 kb on + strandat 1211.266 kb on + strand, within Dsui_1155at 1211.276 kb on + strandat 1211.283 kb on - strand, within Dsui_1155at 1211.342 kb on + strand, within Dsui_1155at 1211.401 kb on - strand, within Dsui_1155at 1211.530 kb on + strand, within Dsui_1155at 1211.552 kb on + strand, within Dsui_1155at 1211.620 kb on + strand, within Dsui_1155at 1211.701 kb on + strand, within Dsui_1155at 1211.813 kb on - strand, within Dsui_1155at 1212.008 kb on - strand, within Dsui_1155at 1212.008 kb on - strand, within Dsui_1155at 1212.050 kb on + strandat 1212.079 kb on + strand, within Dsui_1155at 1212.084 kb on + strand, within Dsui_1155at 1212.092 kb on - strand, within Dsui_1155at 1212.142 kb on - strand, within Dsui_1155at 1212.163 kb on + strandat 1212.163 kb on + strand, within Dsui_1155at 1212.171 kb on - strand, within Dsui_1155at 1212.210 kb on - strandat 1212.227 kb on - strandat 1212.270 kb on + strandat 1212.271 kb on - strandat 1212.297 kb on - strandat 1212.310 kb on - strandat 1212.425 kb on + strandat 1212.431 kb on + strandat 1212.440 kb on - strandat 1212.714 kb on - strand, within Dsui_1156at 1212.714 kb on - strand, within Dsui_1156at 1212.721 kb on + strand, within Dsui_1156at 1212.726 kb on + strandat 1212.893 kb on - strand, within Dsui_1156at 1212.971 kb on - strand, within Dsui_1156at 1213.320 kb on - strandat 1213.325 kb on - strandat 1213.336 kb on + strandat 1213.336 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM
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1,209,717 + -0.3
1,209,724 + Dsui_1154 0.40 -1.3
1,209,814 + Dsui_1154 0.46 +0.7
1,210,009 + Dsui_1154 0.59 -0.3
1,210,009 + Dsui_1154 0.59 -0.3
1,210,009 + +0.7
1,210,037 - Dsui_1154 0.61 -1.4
1,210,044 + Dsui_1154 0.61 -2.1
1,210,186 - Dsui_1154 0.71 +0.4
1,210,283 + Dsui_1154 0.78 -0.3
1,210,366 - Dsui_1154 0.83 -2.0
1,210,368 + Dsui_1154 0.83 -1.3
1,210,411 + Dsui_1154 0.86 -2.5
1,210,639 + -1.6
1,210,639 + -0.9
1,210,647 - -1.1
1,210,647 - -2.0
1,210,678 + -1.6
1,210,709 + -1.6
1,210,928 - Dsui_1155 0.18 -0.6
1,210,941 + Dsui_1155 0.19 +0.7
1,210,966 + -0.3
1,211,266 + Dsui_1155 0.37 +0.7
1,211,276 + +0.7
1,211,283 - Dsui_1155 0.38 -2.5
1,211,342 + Dsui_1155 0.42 -2.1
1,211,401 - Dsui_1155 0.45 -2.7
1,211,530 + Dsui_1155 0.52 +0.7
1,211,552 + Dsui_1155 0.54 -0.9
1,211,620 + Dsui_1155 0.58 -0.3
1,211,701 + Dsui_1155 0.62 -0.3
1,211,813 - Dsui_1155 0.69 -1.3
1,212,008 - Dsui_1155 0.80 -1.4
1,212,008 - Dsui_1155 0.80 -1.6
1,212,050 + -0.9
1,212,079 + Dsui_1155 0.84 -3.4
1,212,084 + Dsui_1155 0.84 -0.3
1,212,092 - Dsui_1155 0.85 -0.4
1,212,142 - Dsui_1155 0.88 -3.7
1,212,163 + -0.9
1,212,163 + Dsui_1155 0.89 -2.6
1,212,171 - Dsui_1155 0.89 -0.4
1,212,210 - -1.1
1,212,227 - +0.0
1,212,270 + +0.7
1,212,271 - -1.3
1,212,297 - -1.7
1,212,310 - -1.3
1,212,425 + +0.7
1,212,431 + +0.7
1,212,440 - +0.7
1,212,714 - Dsui_1156 0.34 +0.7
1,212,714 - Dsui_1156 0.34 -0.9
1,212,721 + Dsui_1156 0.35 -0.9
1,212,726 + +0.7
1,212,893 - Dsui_1156 0.54 -1.3
1,212,971 - Dsui_1156 0.62 -0.3
1,213,320 - -0.3
1,213,325 - -0.9
1,213,336 + -0.3
1,213,336 + -1.9

Or see this region's nucleotide sequence