Experiment: ALP with copper (II) chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1154 and Dsui_1155 are separated by 6 nucleotides Dsui_1155 and Dsui_1156 are separated by 51 nucleotides
Dsui_1154: Dsui_1154 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 1,209,138 to 1,210,613
_1154
Dsui_1155: Dsui_1155 - methionyl-tRNA formyltransferase, at 1,210,620 to 1,212,353
_1155
Dsui_1156: Dsui_1156 - putative divalent heavy-metal cations transporter, at 1,212,405 to 1,213,310
_1156
Position (kb)
1210
1211
1212
1213 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1209.717 kb on + strand at 1209.724 kb on + strand, within Dsui_1154 at 1209.814 kb on + strand, within Dsui_1154 at 1210.009 kb on + strand, within Dsui_1154 at 1210.009 kb on + strand, within Dsui_1154 at 1210.009 kb on + strand at 1210.037 kb on - strand, within Dsui_1154 at 1210.044 kb on + strand, within Dsui_1154 at 1210.186 kb on - strand, within Dsui_1154 at 1210.283 kb on + strand, within Dsui_1154 at 1210.366 kb on - strand, within Dsui_1154 at 1210.368 kb on + strand, within Dsui_1154 at 1210.411 kb on + strand, within Dsui_1154 at 1210.639 kb on + strand at 1210.639 kb on + strand at 1210.647 kb on - strand at 1210.647 kb on - strand at 1210.678 kb on + strand at 1210.709 kb on + strand at 1210.928 kb on - strand, within Dsui_1155 at 1210.941 kb on + strand, within Dsui_1155 at 1210.966 kb on + strand at 1211.266 kb on + strand, within Dsui_1155 at 1211.276 kb on + strand at 1211.283 kb on - strand, within Dsui_1155 at 1211.342 kb on + strand, within Dsui_1155 at 1211.401 kb on - strand, within Dsui_1155 at 1211.530 kb on + strand, within Dsui_1155 at 1211.552 kb on + strand, within Dsui_1155 at 1211.620 kb on + strand, within Dsui_1155 at 1211.701 kb on + strand, within Dsui_1155 at 1211.813 kb on - strand, within Dsui_1155 at 1212.008 kb on - strand, within Dsui_1155 at 1212.008 kb on - strand, within Dsui_1155 at 1212.050 kb on + strand at 1212.079 kb on + strand, within Dsui_1155 at 1212.084 kb on + strand, within Dsui_1155 at 1212.092 kb on - strand, within Dsui_1155 at 1212.142 kb on - strand, within Dsui_1155 at 1212.163 kb on + strand at 1212.163 kb on + strand, within Dsui_1155 at 1212.171 kb on - strand, within Dsui_1155 at 1212.210 kb on - strand at 1212.227 kb on - strand at 1212.270 kb on + strand at 1212.271 kb on - strand at 1212.297 kb on - strand at 1212.310 kb on - strand at 1212.425 kb on + strand at 1212.431 kb on + strand at 1212.440 kb on - strand at 1212.714 kb on - strand, within Dsui_1156 at 1212.714 kb on - strand, within Dsui_1156 at 1212.721 kb on + strand, within Dsui_1156 at 1212.726 kb on + strand at 1212.893 kb on - strand, within Dsui_1156 at 1212.971 kb on - strand, within Dsui_1156 at 1213.320 kb on - strand at 1213.325 kb on - strand at 1213.336 kb on + strand at 1213.336 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM remove 1,209,717 + -0.3 1,209,724 + Dsui_1154 0.40 -1.3 1,209,814 + Dsui_1154 0.46 +0.7 1,210,009 + Dsui_1154 0.59 -0.3 1,210,009 + Dsui_1154 0.59 -0.3 1,210,009 + +0.7 1,210,037 - Dsui_1154 0.61 -1.4 1,210,044 + Dsui_1154 0.61 -2.1 1,210,186 - Dsui_1154 0.71 +0.4 1,210,283 + Dsui_1154 0.78 -0.3 1,210,366 - Dsui_1154 0.83 -2.0 1,210,368 + Dsui_1154 0.83 -1.3 1,210,411 + Dsui_1154 0.86 -2.5 1,210,639 + -1.6 1,210,639 + -0.9 1,210,647 - -1.1 1,210,647 - -2.0 1,210,678 + -1.6 1,210,709 + -1.6 1,210,928 - Dsui_1155 0.18 -0.6 1,210,941 + Dsui_1155 0.19 +0.7 1,210,966 + -0.3 1,211,266 + Dsui_1155 0.37 +0.7 1,211,276 + +0.7 1,211,283 - Dsui_1155 0.38 -2.5 1,211,342 + Dsui_1155 0.42 -2.1 1,211,401 - Dsui_1155 0.45 -2.7 1,211,530 + Dsui_1155 0.52 +0.7 1,211,552 + Dsui_1155 0.54 -0.9 1,211,620 + Dsui_1155 0.58 -0.3 1,211,701 + Dsui_1155 0.62 -0.3 1,211,813 - Dsui_1155 0.69 -1.3 1,212,008 - Dsui_1155 0.80 -1.4 1,212,008 - Dsui_1155 0.80 -1.6 1,212,050 + -0.9 1,212,079 + Dsui_1155 0.84 -3.4 1,212,084 + Dsui_1155 0.84 -0.3 1,212,092 - Dsui_1155 0.85 -0.4 1,212,142 - Dsui_1155 0.88 -3.7 1,212,163 + -0.9 1,212,163 + Dsui_1155 0.89 -2.6 1,212,171 - Dsui_1155 0.89 -0.4 1,212,210 - -1.1 1,212,227 - +0.0 1,212,270 + +0.7 1,212,271 - -1.3 1,212,297 - -1.7 1,212,310 - -1.3 1,212,425 + +0.7 1,212,431 + +0.7 1,212,440 - +0.7 1,212,714 - Dsui_1156 0.34 +0.7 1,212,714 - Dsui_1156 0.34 -0.9 1,212,721 + Dsui_1156 0.35 -0.9 1,212,726 + +0.7 1,212,893 - Dsui_1156 0.54 -1.3 1,212,971 - Dsui_1156 0.62 -0.3 1,213,320 - -0.3 1,213,325 - -0.9 1,213,336 + -0.3 1,213,336 + -1.9
Or see this region's nucleotide sequence