Strain Fitness in Dechlorosoma suillum PS around Dsui_1151

Experiment: ALP with copper (II) chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1149 and Dsui_1150 are separated by 24 nucleotidesDsui_1150 and Dsui_1151 are separated by 104 nucleotidesDsui_1151 and Dsui_1152 are separated by 79 nucleotides Dsui_1149: Dsui_1149 - Zn-dependent protease with chaperone function, at 1,204,152 to 1,205,033 _1149 Dsui_1150: Dsui_1150 - Sigma 54 modulation protein / S30EA ribosomal protein, at 1,205,058 to 1,205,441 _1150 Dsui_1151: Dsui_1151 - transcriptional regulator, at 1,205,546 to 1,206,466 _1151 Dsui_1152: Dsui_1152 - Ni,Fe-hydrogenase I large subunit, at 1,206,546 to 1,208,006 _1152 Position (kb) 1205 1206 1207Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1204.561 kb on - strand, within Dsui_1149at 1204.605 kb on + strand, within Dsui_1149at 1204.622 kb on + strand, within Dsui_1149at 1204.820 kb on + strand, within Dsui_1149at 1204.859 kb on + strandat 1204.976 kb on + strandat 1204.977 kb on + strandat 1205.001 kb on + strandat 1205.035 kb on + strandat 1205.269 kb on + strand, within Dsui_1150at 1205.479 kb on + strandat 1205.479 kb on + strandat 1205.487 kb on - strandat 1205.582 kb on - strandat 1205.660 kb on + strand, within Dsui_1151at 1205.680 kb on + strand, within Dsui_1151at 1205.688 kb on + strand, within Dsui_1151at 1205.707 kb on - strand, within Dsui_1151at 1205.770 kb on + strand, within Dsui_1151at 1205.770 kb on + strand, within Dsui_1151at 1205.778 kb on - strand, within Dsui_1151at 1205.824 kb on + strand, within Dsui_1151at 1205.844 kb on + strand, within Dsui_1151at 1205.873 kb on - strandat 1205.886 kb on - strand, within Dsui_1151at 1205.931 kb on - strand, within Dsui_1151at 1205.992 kb on - strand, within Dsui_1151at 1205.992 kb on - strand, within Dsui_1151at 1206.002 kb on - strand, within Dsui_1151at 1206.046 kb on + strand, within Dsui_1151at 1206.054 kb on + strand, within Dsui_1151at 1206.060 kb on + strand, within Dsui_1151at 1206.107 kb on - strand, within Dsui_1151at 1206.184 kb on - strand, within Dsui_1151at 1206.209 kb on + strand, within Dsui_1151at 1206.250 kb on - strand, within Dsui_1151at 1206.277 kb on + strand, within Dsui_1151at 1206.357 kb on + strand, within Dsui_1151at 1206.379 kb on + strandat 1206.379 kb on + strandat 1206.379 kb on + strandat 1206.387 kb on - strandat 1206.469 kb on - strandat 1206.564 kb on - strandat 1206.602 kb on + strandat 1206.667 kb on - strandat 1206.865 kb on - strand, within Dsui_1152at 1206.974 kb on - strand, within Dsui_1152at 1207.031 kb on - strand, within Dsui_1152at 1207.064 kb on - strand, within Dsui_1152at 1207.089 kb on + strand, within Dsui_1152at 1207.107 kb on + strandat 1207.156 kb on - strand, within Dsui_1152at 1207.352 kb on + strand, within Dsui_1152at 1207.447 kb on + strand, within Dsui_1152at 1207.455 kb on - strand, within Dsui_1152at 1207.455 kb on - strand, within Dsui_1152

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM
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1,204,561 - Dsui_1149 0.46 +0.7
1,204,605 + Dsui_1149 0.51 -0.9
1,204,622 + Dsui_1149 0.53 -0.3
1,204,820 + Dsui_1149 0.76 -2.3
1,204,859 + +0.7
1,204,976 + -0.9
1,204,977 + -1.3
1,205,001 + +0.7
1,205,035 + +0.7
1,205,269 + Dsui_1150 0.55 +0.7
1,205,479 + -0.3
1,205,479 + -3.1
1,205,487 - -0.3
1,205,582 - -2.1
1,205,660 + Dsui_1151 0.12 -4.4
1,205,680 + Dsui_1151 0.15 -1.0
1,205,688 + Dsui_1151 0.15 -2.5
1,205,707 - Dsui_1151 0.17 -0.3
1,205,770 + Dsui_1151 0.24 -2.3
1,205,770 + Dsui_1151 0.24 -2.9
1,205,778 - Dsui_1151 0.25 -0.3
1,205,824 + Dsui_1151 0.30 -2.8
1,205,844 + Dsui_1151 0.32 -2.9
1,205,873 - -0.9
1,205,886 - Dsui_1151 0.37 -1.3
1,205,931 - Dsui_1151 0.42 +0.7
1,205,992 - Dsui_1151 0.48 -2.5
1,205,992 - Dsui_1151 0.48 -0.9
1,206,002 - Dsui_1151 0.50 +0.7
1,206,046 + Dsui_1151 0.54 -1.7
1,206,054 + Dsui_1151 0.55 -1.7
1,206,060 + Dsui_1151 0.56 -2.3
1,206,107 - Dsui_1151 0.61 -3.4
1,206,184 - Dsui_1151 0.69 +0.7
1,206,209 + Dsui_1151 0.72 -2.1
1,206,250 - Dsui_1151 0.76 -0.3
1,206,277 + Dsui_1151 0.79 -2.5
1,206,357 + Dsui_1151 0.88 -0.7
1,206,379 + -2.7
1,206,379 + -3.4
1,206,379 + -2.2
1,206,387 - -1.9
1,206,469 - +0.4
1,206,564 - +0.7
1,206,602 + -1.9
1,206,667 - -1.6
1,206,865 - Dsui_1152 0.22 -0.9
1,206,974 - Dsui_1152 0.29 -1.3
1,207,031 - Dsui_1152 0.33 -1.7
1,207,064 - Dsui_1152 0.35 -1.3
1,207,089 + Dsui_1152 0.37 -0.3
1,207,107 + +0.7
1,207,156 - Dsui_1152 0.42 +0.7
1,207,352 + Dsui_1152 0.55 -0.9
1,207,447 + Dsui_1152 0.62 -2.5
1,207,455 - Dsui_1152 0.62 -2.1
1,207,455 - Dsui_1152 0.62 -1.1

Or see this region's nucleotide sequence