Experiment: ALP with copper (II) chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1149 and Dsui_1150 are separated by 24 nucleotides Dsui_1150 and Dsui_1151 are separated by 104 nucleotides Dsui_1151 and Dsui_1152 are separated by 79 nucleotides
Dsui_1149: Dsui_1149 - Zn-dependent protease with chaperone function, at 1,204,152 to 1,205,033
_1149
Dsui_1150: Dsui_1150 - Sigma 54 modulation protein / S30EA ribosomal protein, at 1,205,058 to 1,205,441
_1150
Dsui_1151: Dsui_1151 - transcriptional regulator, at 1,205,546 to 1,206,466
_1151
Dsui_1152: Dsui_1152 - Ni,Fe-hydrogenase I large subunit, at 1,206,546 to 1,208,006
_1152
Position (kb)
1205
1206
1207 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1204.561 kb on - strand, within Dsui_1149 at 1204.605 kb on + strand, within Dsui_1149 at 1204.622 kb on + strand, within Dsui_1149 at 1204.820 kb on + strand, within Dsui_1149 at 1204.859 kb on + strand at 1204.976 kb on + strand at 1204.977 kb on + strand at 1205.001 kb on + strand at 1205.035 kb on + strand at 1205.269 kb on + strand, within Dsui_1150 at 1205.479 kb on + strand at 1205.479 kb on + strand at 1205.487 kb on - strand at 1205.582 kb on - strand at 1205.660 kb on + strand, within Dsui_1151 at 1205.680 kb on + strand, within Dsui_1151 at 1205.688 kb on + strand, within Dsui_1151 at 1205.707 kb on - strand, within Dsui_1151 at 1205.770 kb on + strand, within Dsui_1151 at 1205.770 kb on + strand, within Dsui_1151 at 1205.778 kb on - strand, within Dsui_1151 at 1205.824 kb on + strand, within Dsui_1151 at 1205.844 kb on + strand, within Dsui_1151 at 1205.873 kb on - strand at 1205.886 kb on - strand, within Dsui_1151 at 1205.931 kb on - strand, within Dsui_1151 at 1205.992 kb on - strand, within Dsui_1151 at 1205.992 kb on - strand, within Dsui_1151 at 1206.002 kb on - strand, within Dsui_1151 at 1206.046 kb on + strand, within Dsui_1151 at 1206.054 kb on + strand, within Dsui_1151 at 1206.060 kb on + strand, within Dsui_1151 at 1206.107 kb on - strand, within Dsui_1151 at 1206.184 kb on - strand, within Dsui_1151 at 1206.209 kb on + strand, within Dsui_1151 at 1206.250 kb on - strand, within Dsui_1151 at 1206.277 kb on + strand, within Dsui_1151 at 1206.357 kb on + strand, within Dsui_1151 at 1206.379 kb on + strand at 1206.379 kb on + strand at 1206.379 kb on + strand at 1206.387 kb on - strand at 1206.469 kb on - strand at 1206.564 kb on - strand at 1206.602 kb on + strand at 1206.667 kb on - strand at 1206.865 kb on - strand, within Dsui_1152 at 1206.974 kb on - strand, within Dsui_1152 at 1207.031 kb on - strand, within Dsui_1152 at 1207.064 kb on - strand, within Dsui_1152 at 1207.089 kb on + strand, within Dsui_1152 at 1207.107 kb on + strand at 1207.156 kb on - strand, within Dsui_1152 at 1207.352 kb on + strand, within Dsui_1152 at 1207.447 kb on + strand, within Dsui_1152 at 1207.455 kb on - strand, within Dsui_1152 at 1207.455 kb on - strand, within Dsui_1152
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM remove 1,204,561 - Dsui_1149 0.46 +0.7 1,204,605 + Dsui_1149 0.51 -0.9 1,204,622 + Dsui_1149 0.53 -0.3 1,204,820 + Dsui_1149 0.76 -2.3 1,204,859 + +0.7 1,204,976 + -0.9 1,204,977 + -1.3 1,205,001 + +0.7 1,205,035 + +0.7 1,205,269 + Dsui_1150 0.55 +0.7 1,205,479 + -0.3 1,205,479 + -3.1 1,205,487 - -0.3 1,205,582 - -2.1 1,205,660 + Dsui_1151 0.12 -4.4 1,205,680 + Dsui_1151 0.15 -1.0 1,205,688 + Dsui_1151 0.15 -2.5 1,205,707 - Dsui_1151 0.17 -0.3 1,205,770 + Dsui_1151 0.24 -2.3 1,205,770 + Dsui_1151 0.24 -2.9 1,205,778 - Dsui_1151 0.25 -0.3 1,205,824 + Dsui_1151 0.30 -2.8 1,205,844 + Dsui_1151 0.32 -2.9 1,205,873 - -0.9 1,205,886 - Dsui_1151 0.37 -1.3 1,205,931 - Dsui_1151 0.42 +0.7 1,205,992 - Dsui_1151 0.48 -2.5 1,205,992 - Dsui_1151 0.48 -0.9 1,206,002 - Dsui_1151 0.50 +0.7 1,206,046 + Dsui_1151 0.54 -1.7 1,206,054 + Dsui_1151 0.55 -1.7 1,206,060 + Dsui_1151 0.56 -2.3 1,206,107 - Dsui_1151 0.61 -3.4 1,206,184 - Dsui_1151 0.69 +0.7 1,206,209 + Dsui_1151 0.72 -2.1 1,206,250 - Dsui_1151 0.76 -0.3 1,206,277 + Dsui_1151 0.79 -2.5 1,206,357 + Dsui_1151 0.88 -0.7 1,206,379 + -2.7 1,206,379 + -3.4 1,206,379 + -2.2 1,206,387 - -1.9 1,206,469 - +0.4 1,206,564 - +0.7 1,206,602 + -1.9 1,206,667 - -1.6 1,206,865 - Dsui_1152 0.22 -0.9 1,206,974 - Dsui_1152 0.29 -1.3 1,207,031 - Dsui_1152 0.33 -1.7 1,207,064 - Dsui_1152 0.35 -1.3 1,207,089 + Dsui_1152 0.37 -0.3 1,207,107 + +0.7 1,207,156 - Dsui_1152 0.42 +0.7 1,207,352 + Dsui_1152 0.55 -0.9 1,207,447 + Dsui_1152 0.62 -2.5 1,207,455 - Dsui_1152 0.62 -2.1 1,207,455 - Dsui_1152 0.62 -1.1
Or see this region's nucleotide sequence