Strain Fitness in Dechlorosoma suillum PS around Dsui_0980

Experiment: ALP with copper (II) chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0978 and Dsui_0979 are separated by 116 nucleotidesDsui_0979 and Dsui_0980 are separated by 132 nucleotidesDsui_0980 and Dsui_0981 are separated by 20 nucleotidesDsui_0981 and Dsui_0982 are separated by 63 nucleotides Dsui_0978: Dsui_0978 - 2-hydroxychromene-2-carboxylate isomerase, at 1,004,864 to 1,005,466 _0978 Dsui_0979: Dsui_0979 - TIGR00730 family protein, at 1,005,583 to 1,006,167 _0979 Dsui_0980: Dsui_0980 - acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta), at 1,006,300 to 1,007,907 _0980 Dsui_0981: Dsui_0981 - enoyl-CoA hydratase/carnithine racemase, at 1,007,928 to 1,008,719 _0981 Dsui_0982: Dsui_0982 - acetyl/propionyl-CoA carboxylase, alpha subunit, at 1,008,783 to 1,010,786 _0982 Position (kb) 1006 1007 1008Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1005.414 kb on - strandat 1005.540 kb on + strandat 1005.670 kb on + strand, within Dsui_0979at 1005.848 kb on + strand, within Dsui_0979at 1005.939 kb on - strand, within Dsui_0979at 1006.064 kb on + strand, within Dsui_0979at 1006.068 kb on + strand, within Dsui_0979at 1006.106 kb on - strand, within Dsui_0979at 1006.416 kb on - strandat 1006.488 kb on + strand, within Dsui_0980at 1006.613 kb on - strand, within Dsui_0980at 1006.646 kb on - strand, within Dsui_0980at 1006.653 kb on + strand, within Dsui_0980at 1006.715 kb on + strand, within Dsui_0980at 1006.721 kb on + strand, within Dsui_0980at 1006.723 kb on - strandat 1006.799 kb on + strand, within Dsui_0980at 1006.799 kb on + strand, within Dsui_0980at 1006.822 kb on + strand, within Dsui_0980at 1006.830 kb on - strandat 1006.900 kb on - strand, within Dsui_0980at 1007.432 kb on + strand, within Dsui_0980at 1007.530 kb on - strand, within Dsui_0980at 1007.654 kb on - strand, within Dsui_0980at 1007.751 kb on + strandat 1007.790 kb on + strandat 1008.053 kb on + strand, within Dsui_0981at 1008.084 kb on - strand, within Dsui_0981at 1008.613 kb on + strand, within Dsui_0981at 1008.637 kb on - strand, within Dsui_0981

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM
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1,005,414 - -0.2
1,005,540 + -2.8
1,005,670 + Dsui_0979 0.15 -0.7
1,005,848 + Dsui_0979 0.45 -0.8
1,005,939 - Dsui_0979 0.61 +0.8
1,006,064 + Dsui_0979 0.82 +0.1
1,006,068 + Dsui_0979 0.83 -1.1
1,006,106 - Dsui_0979 0.89 +0.8
1,006,416 - -0.2
1,006,488 + Dsui_0980 0.12 -1.1
1,006,613 - Dsui_0980 0.19 -2.2
1,006,646 - Dsui_0980 0.22 -1.2
1,006,653 + Dsui_0980 0.22 -3.5
1,006,715 + Dsui_0980 0.26 -2.0
1,006,721 + Dsui_0980 0.26 -0.0
1,006,723 - +0.8
1,006,799 + Dsui_0980 0.31 -4.7
1,006,799 + Dsui_0980 0.31 -2.3
1,006,822 + Dsui_0980 0.32 -0.8
1,006,830 - +0.8
1,006,900 - Dsui_0980 0.37 -1.5
1,007,432 + Dsui_0980 0.70 -1.7
1,007,530 - Dsui_0980 0.76 +0.8
1,007,654 - Dsui_0980 0.84 -0.8
1,007,751 + +0.8
1,007,790 + -0.9
1,008,053 + Dsui_0981 0.16 -1.5
1,008,084 - Dsui_0981 0.20 +0.2
1,008,613 + Dsui_0981 0.86 -1.3
1,008,637 - Dsui_0981 0.90 -1.2

Or see this region's nucleotide sequence