Strain Fitness in Dechlorosoma suillum PS around Dsui_0979

Experiment: ALP with copper (II) chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0977 and Dsui_0978 are separated by 87 nucleotidesDsui_0978 and Dsui_0979 are separated by 116 nucleotidesDsui_0979 and Dsui_0980 are separated by 132 nucleotides Dsui_0977: Dsui_0977 - acyl-CoA dehydrogenase, at 1,003,640 to 1,004,776 _0977 Dsui_0978: Dsui_0978 - 2-hydroxychromene-2-carboxylate isomerase, at 1,004,864 to 1,005,466 _0978 Dsui_0979: Dsui_0979 - TIGR00730 family protein, at 1,005,583 to 1,006,167 _0979 Dsui_0980: Dsui_0980 - acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta), at 1,006,300 to 1,007,907 _0980 Position (kb) 1005 1006 1007Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1004.641 kb on + strand, within Dsui_0977at 1004.657 kb on + strand, within Dsui_0977at 1004.762 kb on - strandat 1004.778 kb on - strandat 1004.829 kb on + strandat 1004.829 kb on + strandat 1004.996 kb on - strand, within Dsui_0978at 1005.128 kb on - strand, within Dsui_0978at 1005.178 kb on + strand, within Dsui_0978at 1005.222 kb on - strand, within Dsui_0978at 1005.414 kb on - strandat 1005.540 kb on + strandat 1005.670 kb on + strand, within Dsui_0979at 1005.848 kb on + strand, within Dsui_0979at 1005.939 kb on - strand, within Dsui_0979at 1006.064 kb on + strand, within Dsui_0979at 1006.068 kb on + strand, within Dsui_0979at 1006.106 kb on - strand, within Dsui_0979at 1006.416 kb on - strandat 1006.488 kb on + strand, within Dsui_0980at 1006.613 kb on - strand, within Dsui_0980at 1006.646 kb on - strand, within Dsui_0980at 1006.653 kb on + strand, within Dsui_0980at 1006.715 kb on + strand, within Dsui_0980at 1006.721 kb on + strand, within Dsui_0980at 1006.723 kb on - strandat 1006.799 kb on + strand, within Dsui_0980at 1006.799 kb on + strand, within Dsui_0980at 1006.822 kb on + strand, within Dsui_0980at 1006.830 kb on - strandat 1006.900 kb on - strand, within Dsui_0980

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM
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1,004,641 + Dsui_0977 0.88 -0.8
1,004,657 + Dsui_0977 0.89 -1.2
1,004,762 - +0.8
1,004,778 - +0.8
1,004,829 + -1.7
1,004,829 + +0.8
1,004,996 - Dsui_0978 0.22 +0.8
1,005,128 - Dsui_0978 0.44 -0.2
1,005,178 + Dsui_0978 0.52 -1.8
1,005,222 - Dsui_0978 0.59 -1.8
1,005,414 - -0.2
1,005,540 + -2.8
1,005,670 + Dsui_0979 0.15 -0.7
1,005,848 + Dsui_0979 0.45 -0.8
1,005,939 - Dsui_0979 0.61 +0.8
1,006,064 + Dsui_0979 0.82 +0.1
1,006,068 + Dsui_0979 0.83 -1.1
1,006,106 - Dsui_0979 0.89 +0.8
1,006,416 - -0.2
1,006,488 + Dsui_0980 0.12 -1.1
1,006,613 - Dsui_0980 0.19 -2.2
1,006,646 - Dsui_0980 0.22 -1.2
1,006,653 + Dsui_0980 0.22 -3.5
1,006,715 + Dsui_0980 0.26 -2.0
1,006,721 + Dsui_0980 0.26 -0.0
1,006,723 - +0.8
1,006,799 + Dsui_0980 0.31 -4.7
1,006,799 + Dsui_0980 0.31 -2.3
1,006,822 + Dsui_0980 0.32 -0.8
1,006,830 - +0.8
1,006,900 - Dsui_0980 0.37 -1.5

Or see this region's nucleotide sequence