Strain Fitness in Dechlorosoma suillum PS around Dsui_0953

Experiment: ALP with copper (II) chloride 0.6 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_0951 and Dsui_0952 are separated by 126 nucleotidesDsui_0952 and Dsui_0953 are separated by 94 nucleotidesDsui_0953 and Dsui_0954 are separated by 13 nucleotides Dsui_0951: Dsui_0951 - nucleoside-diphosphate-sugar epimerase, at 976,773 to 977,732 _0951 Dsui_0952: Dsui_0952 - chemotaxis protein, at 977,859 to 978,482 _0952 Dsui_0953: Dsui_0953 - ADP-ribosyl-(dinitrogen reductase) hydrolase, at 978,577 to 979,500 _0953 Dsui_0954: Dsui_0954 - Dinitrogenase reductase ADP-ribosyltransferase (DRAT), at 979,514 to 980,365 _0954 Position (kb) 978 979 980Strain fitness (log2 ratio) -3 -2 -1 0 1at 977.590 kb on + strand, within Dsui_0951at 977.590 kb on + strand, within Dsui_0951at 977.598 kb on - strand, within Dsui_0951at 977.632 kb on - strand, within Dsui_0951at 977.666 kb on + strandat 977.666 kb on + strandat 977.672 kb on + strandat 977.676 kb on + strandat 977.684 kb on - strandat 977.695 kb on + strandat 977.752 kb on + strandat 977.850 kb on - strandat 977.865 kb on - strandat 977.889 kb on - strandat 977.942 kb on - strand, within Dsui_0952at 977.962 kb on + strand, within Dsui_0952at 978.105 kb on + strand, within Dsui_0952at 978.143 kb on + strandat 978.143 kb on + strand, within Dsui_0952at 978.151 kb on - strand, within Dsui_0952at 978.156 kb on - strand, within Dsui_0952at 978.165 kb on + strand, within Dsui_0952at 978.172 kb on - strand, within Dsui_0952at 978.316 kb on + strandat 978.316 kb on + strandat 978.316 kb on + strand, within Dsui_0952at 978.349 kb on - strand, within Dsui_0952at 978.419 kb on + strand, within Dsui_0952at 978.419 kb on + strandat 978.427 kb on - strandat 978.463 kb on - strandat 978.499 kb on - strandat 978.728 kb on - strand, within Dsui_0953at 978.754 kb on - strand, within Dsui_0953at 978.831 kb on + strand, within Dsui_0953at 978.836 kb on - strandat 978.963 kb on + strand, within Dsui_0953at 978.971 kb on - strand, within Dsui_0953at 979.038 kb on - strandat 979.213 kb on + strand, within Dsui_0953at 979.379 kb on - strand, within Dsui_0953at 979.511 kb on + strandat 979.526 kb on + strandat 979.587 kb on - strandat 979.636 kb on + strand, within Dsui_0954at 979.644 kb on - strand, within Dsui_0954at 979.668 kb on - strandat 979.837 kb on + strandat 979.846 kb on + strand, within Dsui_0954at 979.956 kb on + strandat 980.077 kb on - strand, within Dsui_0954at 980.163 kb on + strand, within Dsui_0954at 980.242 kb on - strand, within Dsui_0954

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM
remove
977,590 + Dsui_0951 0.85 -3.2
977,590 + Dsui_0951 0.85 -1.1
977,598 - Dsui_0951 0.86 -2.2
977,632 - Dsui_0951 0.89 +0.8
977,666 + +0.0
977,666 + +0.8
977,672 + -1.8
977,676 + +0.3
977,684 - +0.8
977,695 + -0.4
977,752 + -0.4
977,850 - -0.8
977,865 - -0.2
977,889 - -0.2
977,942 - Dsui_0952 0.13 -3.4
977,962 + Dsui_0952 0.17 -0.8
978,105 + Dsui_0952 0.39 +0.8
978,143 + -0.2
978,143 + Dsui_0952 0.46 -0.2
978,151 - Dsui_0952 0.47 -2.0
978,156 - Dsui_0952 0.48 -1.5
978,165 + Dsui_0952 0.49 -0.2
978,172 - Dsui_0952 0.50 -0.2
978,316 + +0.8
978,316 + +0.8
978,316 + Dsui_0952 0.73 -2.6
978,349 - Dsui_0952 0.79 +0.8
978,419 + Dsui_0952 0.90 -1.8
978,419 + +0.8
978,427 - -1.2
978,463 - +0.8
978,499 - +0.8
978,728 - Dsui_0953 0.16 -1.5
978,754 - Dsui_0953 0.19 -0.2
978,831 + Dsui_0953 0.27 +0.8
978,836 - +0.8
978,963 + Dsui_0953 0.42 -1.5
978,971 - Dsui_0953 0.43 -1.4
979,038 - -0.8
979,213 + Dsui_0953 0.69 +0.8
979,379 - Dsui_0953 0.87 -0.2
979,511 + -0.8
979,526 + -1.5
979,587 - -0.2
979,636 + Dsui_0954 0.14 -0.2
979,644 - Dsui_0954 0.15 -0.8
979,668 - +0.8
979,837 + -0.2
979,846 + Dsui_0954 0.39 -1.5
979,956 + +0.8
980,077 - Dsui_0954 0.66 -0.2
980,163 + Dsui_0954 0.76 -1.2
980,242 - Dsui_0954 0.85 -0.2

Or see this region's nucleotide sequence