Experiment: ALP with copper (II) chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0843 and Dsui_0844 are separated by 79 nucleotides Dsui_0844 and Dsui_0845 are separated by 123 nucleotides
Dsui_0843: Dsui_0843 - branched-chain amino acid ABC-type transport system, permease component, at 858,890 to 859,939
_0843
Dsui_0844: Dsui_0844 - ABC-type branched-chain amino acid transport system, periplasmic component, at 860,019 to 861,173
_0844
Dsui_0845: Dsui_0845 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 861,297 to 862,994
_0845
Position (kb)
860
861
862 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 859.215 kb on + strand, within Dsui_0843 at 859.260 kb on + strand, within Dsui_0843 at 859.265 kb on + strand, within Dsui_0843 at 859.265 kb on + strand, within Dsui_0843 at 859.265 kb on + strand, within Dsui_0843 at 859.265 kb on + strand, within Dsui_0843 at 859.265 kb on + strand, within Dsui_0843 at 859.265 kb on + strand, within Dsui_0843 at 859.266 kb on - strand, within Dsui_0843 at 859.268 kb on - strand, within Dsui_0843 at 859.273 kb on - strand, within Dsui_0843 at 859.273 kb on - strand, within Dsui_0843 at 859.273 kb on - strand, within Dsui_0843 at 859.346 kb on - strand, within Dsui_0843 at 859.397 kb on + strand, within Dsui_0843 at 859.426 kb on + strand, within Dsui_0843 at 859.515 kb on + strand, within Dsui_0843 at 859.586 kb on + strand, within Dsui_0843 at 859.637 kb on - strand, within Dsui_0843 at 859.696 kb on - strand, within Dsui_0843 at 859.696 kb on - strand, within Dsui_0843 at 859.714 kb on + strand, within Dsui_0843 at 859.722 kb on - strand, within Dsui_0843 at 859.744 kb on + strand, within Dsui_0843 at 859.752 kb on - strand, within Dsui_0843 at 859.786 kb on + strand, within Dsui_0843 at 859.786 kb on + strand, within Dsui_0843 at 859.794 kb on - strand, within Dsui_0843 at 859.795 kb on - strand, within Dsui_0843 at 859.861 kb on + strand at 859.861 kb on + strand at 859.959 kb on + strand at 859.967 kb on - strand at 859.969 kb on - strand at 860.000 kb on - strand at 860.030 kb on + strand at 860.038 kb on - strand at 860.075 kb on + strand at 860.157 kb on + strand, within Dsui_0844 at 860.177 kb on + strand, within Dsui_0844 at 860.188 kb on + strand, within Dsui_0844 at 860.196 kb on - strand, within Dsui_0844 at 860.199 kb on + strand, within Dsui_0844 at 860.240 kb on + strand, within Dsui_0844 at 860.248 kb on - strand, within Dsui_0844 at 860.283 kb on + strand, within Dsui_0844 at 860.290 kb on + strand, within Dsui_0844 at 860.317 kb on - strand, within Dsui_0844 at 860.399 kb on - strand, within Dsui_0844 at 860.467 kb on + strand, within Dsui_0844 at 860.475 kb on - strand, within Dsui_0844 at 860.567 kb on - strand, within Dsui_0844 at 860.653 kb on + strand, within Dsui_0844 at 860.709 kb on + strand, within Dsui_0844 at 860.768 kb on + strand, within Dsui_0844 at 860.956 kb on - strand, within Dsui_0844 at 860.961 kb on - strand, within Dsui_0844 at 861.001 kb on - strand, within Dsui_0844 at 861.010 kb on + strand, within Dsui_0844 at 861.010 kb on + strand, within Dsui_0844 at 861.018 kb on - strand, within Dsui_0844 at 861.031 kb on - strand, within Dsui_0844 at 861.116 kb on - strand at 861.116 kb on - strand at 861.223 kb on + strand at 861.228 kb on + strand at 861.231 kb on - strand at 861.253 kb on - strand at 861.278 kb on - strand at 861.278 kb on - strand at 861.307 kb on + strand at 861.307 kb on + strand at 861.385 kb on - strand at 861.409 kb on - strand at 861.419 kb on - strand at 861.453 kb on - strand at 861.469 kb on - strand at 861.475 kb on - strand, within Dsui_0845 at 861.531 kb on + strand, within Dsui_0845 at 861.536 kb on + strand, within Dsui_0845 at 861.602 kb on + strand, within Dsui_0845 at 861.610 kb on - strand, within Dsui_0845 at 861.610 kb on - strand, within Dsui_0845 at 861.613 kb on + strand, within Dsui_0845 at 861.615 kb on + strand, within Dsui_0845 at 861.631 kb on - strand, within Dsui_0845 at 861.664 kb on + strand, within Dsui_0845 at 861.664 kb on + strand, within Dsui_0845 at 861.664 kb on + strand, within Dsui_0845 at 861.672 kb on - strand, within Dsui_0845 at 861.683 kb on - strand, within Dsui_0845 at 861.770 kb on - strand, within Dsui_0845 at 861.773 kb on + strand, within Dsui_0845 at 861.787 kb on - strand, within Dsui_0845 at 861.787 kb on - strand, within Dsui_0845 at 861.787 kb on - strand, within Dsui_0845 at 861.814 kb on + strand, within Dsui_0845 at 861.822 kb on - strand, within Dsui_0845 at 861.830 kb on + strand, within Dsui_0845 at 861.848 kb on - strand, within Dsui_0845 at 861.894 kb on - strand, within Dsui_0845 at 861.905 kb on - strand, within Dsui_0845 at 861.905 kb on - strand, within Dsui_0845 at 861.935 kb on - strand, within Dsui_0845 at 861.968 kb on + strand, within Dsui_0845 at 862.016 kb on - strand, within Dsui_0845 at 862.026 kb on - strand, within Dsui_0845 at 862.065 kb on - strand, within Dsui_0845 at 862.080 kb on - strand, within Dsui_0845 at 862.114 kb on - strand, within Dsui_0845 at 862.135 kb on - strand, within Dsui_0845
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM remove 859,215 + Dsui_0843 0.31 -1.5 859,260 + Dsui_0843 0.35 -0.7 859,265 + Dsui_0843 0.36 +0.9 859,265 + Dsui_0843 0.36 +0.9 859,265 + Dsui_0843 0.36 -1.5 859,265 + Dsui_0843 0.36 -0.1 859,265 + Dsui_0843 0.36 -3.0 859,265 + Dsui_0843 0.36 -1.7 859,266 - Dsui_0843 0.36 -1.7 859,268 - Dsui_0843 0.36 -1.9 859,273 - Dsui_0843 0.36 -1.5 859,273 - Dsui_0843 0.36 -1.0 859,273 - Dsui_0843 0.36 -2.5 859,346 - Dsui_0843 0.43 -2.1 859,397 + Dsui_0843 0.48 -1.7 859,426 + Dsui_0843 0.51 +0.9 859,515 + Dsui_0843 0.60 +0.2 859,586 + Dsui_0843 0.66 -2.8 859,637 - Dsui_0843 0.71 -2.6 859,696 - Dsui_0843 0.77 -1.3 859,696 - Dsui_0843 0.77 -2.2 859,714 + Dsui_0843 0.78 +0.9 859,722 - Dsui_0843 0.79 -1.7 859,744 + Dsui_0843 0.81 -0.7 859,752 - Dsui_0843 0.82 -1.2 859,786 + Dsui_0843 0.85 -0.7 859,786 + Dsui_0843 0.85 -2.3 859,794 - Dsui_0843 0.86 -1.7 859,795 - Dsui_0843 0.86 -1.0 859,861 + -0.7 859,861 + -0.7 859,959 + -1.1 859,967 - -1.6 859,969 - -0.8 860,000 - -1.3 860,030 + -2.5 860,038 - -1.0 860,075 + -0.1 860,157 + Dsui_0844 0.12 +0.9 860,177 + Dsui_0844 0.14 -1.1 860,188 + Dsui_0844 0.15 -2.7 860,196 - Dsui_0844 0.15 -0.5 860,199 + Dsui_0844 0.16 +1.9 860,240 + Dsui_0844 0.19 -0.1 860,248 - Dsui_0844 0.20 -0.1 860,283 + Dsui_0844 0.23 -2.1 860,290 + Dsui_0844 0.23 -1.5 860,317 - Dsui_0844 0.26 -1.6 860,399 - Dsui_0844 0.33 -1.8 860,467 + Dsui_0844 0.39 -1.5 860,475 - Dsui_0844 0.39 -1.1 860,567 - Dsui_0844 0.47 -1.8 860,653 + Dsui_0844 0.55 +0.9 860,709 + Dsui_0844 0.60 -0.1 860,768 + Dsui_0844 0.65 +0.9 860,956 - Dsui_0844 0.81 -1.2 860,961 - Dsui_0844 0.82 -1.2 861,001 - Dsui_0844 0.85 -1.1 861,010 + Dsui_0844 0.86 -1.1 861,010 + Dsui_0844 0.86 +0.9 861,018 - Dsui_0844 0.86 -3.2 861,031 - Dsui_0844 0.88 -2.1 861,116 - -2.4 861,116 - -1.7 861,223 + +0.9 861,228 + +0.9 861,231 - -0.1 861,253 - -2.5 861,278 - -0.7 861,278 - +0.9 861,307 + +0.9 861,307 + +0.9 861,385 - +0.9 861,409 - -1.1 861,419 - -0.1 861,453 - -0.1 861,469 - +0.9 861,475 - Dsui_0845 0.10 -0.7 861,531 + Dsui_0845 0.14 +0.9 861,536 + Dsui_0845 0.14 +0.9 861,602 + Dsui_0845 0.18 +0.9 861,610 - Dsui_0845 0.18 -2.3 861,610 - Dsui_0845 0.18 -3.0 861,613 + Dsui_0845 0.19 +0.9 861,615 + Dsui_0845 0.19 -0.7 861,631 - Dsui_0845 0.20 -1.5 861,664 + Dsui_0845 0.22 -0.1 861,664 + Dsui_0845 0.22 -0.7 861,664 + Dsui_0845 0.22 +0.9 861,672 - Dsui_0845 0.22 -2.9 861,683 - Dsui_0845 0.23 -2.5 861,770 - Dsui_0845 0.28 -1.9 861,773 + Dsui_0845 0.28 +0.9 861,787 - Dsui_0845 0.29 -2.9 861,787 - Dsui_0845 0.29 -0.6 861,787 - Dsui_0845 0.29 -0.7 861,814 + Dsui_0845 0.30 -0.1 861,822 - Dsui_0845 0.31 -0.7 861,830 + Dsui_0845 0.31 +0.9 861,848 - Dsui_0845 0.32 -1.9 861,894 - Dsui_0845 0.35 -1.9 861,905 - Dsui_0845 0.36 -2.1 861,905 - Dsui_0845 0.36 -0.7 861,935 - Dsui_0845 0.38 -2.1 861,968 + Dsui_0845 0.40 +0.9 862,016 - Dsui_0845 0.42 -1.7 862,026 - Dsui_0845 0.43 -0.7 862,065 - Dsui_0845 0.45 -1.5 862,080 - Dsui_0845 0.46 +0.9 862,114 - Dsui_0845 0.48 -2.2 862,135 - Dsui_0845 0.49 -2.3
Or see this region's nucleotide sequence