Experiment: ALP with copper (II) chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0813 and Dsui_0814 overlap by 1 nucleotides Dsui_0814 and Dsui_0815 are separated by 90 nucleotides Dsui_0815 and Dsui_0816 are separated by 57 nucleotides
Dsui_0813: Dsui_0813 - cation diffusion facilitator family transporter, at 824,862 to 825,764
_0813
Dsui_0814: Dsui_0814 - S1/P1 Nuclease, at 825,764 to 826,687
_0814
Dsui_0815: Dsui_0815 - Zn-dependent protease with chaperone function, at 826,778 to 827,623
_0815
Dsui_0816: Dsui_0816 - methionyl-tRNA formyltransferase, at 827,681 to 828,607
_0816
Position (kb)
825
826
827 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 824.794 kb on + strand at 824.825 kb on + strand at 824.825 kb on + strand at 824.825 kb on + strand at 824.830 kb on + strand at 824.844 kb on - strand at 824.867 kb on + strand at 824.867 kb on - strand at 824.870 kb on - strand at 824.875 kb on - strand at 824.877 kb on + strand at 824.880 kb on - strand at 824.885 kb on - strand at 824.890 kb on + strand at 824.943 kb on + strand at 824.943 kb on + strand at 824.948 kb on + strand at 824.948 kb on + strand at 824.951 kb on - strand at 825.021 kb on + strand, within Dsui_0813 at 825.021 kb on + strand, within Dsui_0813 at 825.080 kb on + strand, within Dsui_0813 at 825.083 kb on - strand, within Dsui_0813 at 825.088 kb on - strand, within Dsui_0813 at 825.118 kb on + strand, within Dsui_0813 at 825.127 kb on - strand, within Dsui_0813 at 825.143 kb on - strand, within Dsui_0813 at 825.147 kb on + strand, within Dsui_0813 at 825.204 kb on + strand, within Dsui_0813 at 825.212 kb on - strand, within Dsui_0813 at 825.214 kb on + strand, within Dsui_0813 at 825.268 kb on + strand, within Dsui_0813 at 825.292 kb on + strand, within Dsui_0813 at 825.292 kb on + strand, within Dsui_0813 at 825.300 kb on - strand, within Dsui_0813 at 825.300 kb on - strand, within Dsui_0813 at 825.307 kb on + strand, within Dsui_0813 at 825.314 kb on + strand, within Dsui_0813 at 825.314 kb on + strand, within Dsui_0813 at 825.314 kb on + strand, within Dsui_0813 at 825.314 kb on + strand, within Dsui_0813 at 825.314 kb on + strand, within Dsui_0813 at 825.315 kb on - strand, within Dsui_0813 at 825.322 kb on - strand, within Dsui_0813 at 825.322 kb on - strand, within Dsui_0813 at 825.322 kb on - strand, within Dsui_0813 at 825.322 kb on - strand, within Dsui_0813 at 825.322 kb on - strand, within Dsui_0813 at 825.322 kb on - strand, within Dsui_0813 at 825.322 kb on - strand, within Dsui_0813 at 825.334 kb on - strand, within Dsui_0813 at 825.349 kb on + strand, within Dsui_0813 at 825.364 kb on + strand, within Dsui_0813 at 825.396 kb on - strand, within Dsui_0813 at 825.412 kb on - strand, within Dsui_0813 at 825.431 kb on + strand, within Dsui_0813 at 825.436 kb on - strand, within Dsui_0813 at 825.438 kb on + strand, within Dsui_0813 at 825.455 kb on + strand, within Dsui_0813 at 825.525 kb on - strand, within Dsui_0813 at 825.569 kb on - strand, within Dsui_0813 at 825.658 kb on - strand, within Dsui_0813 at 825.758 kb on + strand at 825.818 kb on + strand at 825.832 kb on - strand at 825.871 kb on - strand, within Dsui_0814 at 825.910 kb on + strand, within Dsui_0814 at 825.918 kb on - strand, within Dsui_0814 at 825.920 kb on + strand, within Dsui_0814 at 825.920 kb on + strand, within Dsui_0814 at 825.928 kb on - strand, within Dsui_0814 at 825.929 kb on - strand, within Dsui_0814 at 825.986 kb on - strand, within Dsui_0814 at 825.998 kb on + strand, within Dsui_0814 at 826.006 kb on - strand, within Dsui_0814 at 826.079 kb on - strand, within Dsui_0814 at 826.085 kb on + strand, within Dsui_0814 at 826.109 kb on - strand, within Dsui_0814 at 826.125 kb on + strand, within Dsui_0814 at 826.135 kb on + strand, within Dsui_0814 at 826.140 kb on + strand, within Dsui_0814 at 826.192 kb on + strand, within Dsui_0814 at 826.237 kb on + strand, within Dsui_0814 at 826.242 kb on + strand, within Dsui_0814 at 826.245 kb on - strand, within Dsui_0814 at 826.249 kb on + strand, within Dsui_0814 at 826.252 kb on - strand, within Dsui_0814 at 826.254 kb on + strand, within Dsui_0814 at 826.369 kb on + strand, within Dsui_0814 at 826.379 kb on + strand, within Dsui_0814 at 826.422 kb on + strand, within Dsui_0814 at 826.461 kb on + strand, within Dsui_0814 at 826.471 kb on + strand, within Dsui_0814 at 826.471 kb on - strand, within Dsui_0814 at 826.473 kb on + strand, within Dsui_0814 at 826.491 kb on - strand, within Dsui_0814 at 826.546 kb on + strand, within Dsui_0814 at 826.591 kb on + strand, within Dsui_0814 at 826.593 kb on - strand, within Dsui_0814 at 826.606 kb on + strand at 826.614 kb on - strand at 826.633 kb on + strand at 826.641 kb on - strand at 826.663 kb on + strand at 826.699 kb on + strand at 826.699 kb on + strand at 826.707 kb on - strand at 826.707 kb on - strand at 826.707 kb on - strand at 826.753 kb on - strand at 826.854 kb on + strand at 826.854 kb on + strand at 826.862 kb on - strand at 826.926 kb on + strand, within Dsui_0815 at 826.928 kb on - strand, within Dsui_0815 at 826.952 kb on - strand, within Dsui_0815 at 826.952 kb on - strand, within Dsui_0815 at 826.952 kb on - strand, within Dsui_0815 at 826.957 kb on - strand, within Dsui_0815 at 826.976 kb on - strand, within Dsui_0815 at 826.980 kb on + strand, within Dsui_0815 at 827.015 kb on - strand, within Dsui_0815 at 827.135 kb on - strand, within Dsui_0815 at 827.155 kb on - strand, within Dsui_0815 at 827.232 kb on - strand, within Dsui_0815 at 827.259 kb on - strand, within Dsui_0815 at 827.308 kb on - strand, within Dsui_0815 at 827.328 kb on + strand, within Dsui_0815 at 827.352 kb on + strand, within Dsui_0815 at 827.352 kb on + strand, within Dsui_0815 at 827.363 kb on + strand, within Dsui_0815 at 827.363 kb on + strand, within Dsui_0815 at 827.409 kb on - strand, within Dsui_0815 at 827.413 kb on - strand, within Dsui_0815 at 827.419 kb on - strand, within Dsui_0815 at 827.450 kb on + strand, within Dsui_0815 at 827.461 kb on + strand, within Dsui_0815 at 827.507 kb on + strand, within Dsui_0815 at 827.508 kb on + strand, within Dsui_0815 at 827.508 kb on + strand, within Dsui_0815 at 827.531 kb on + strand, within Dsui_0815 at 827.531 kb on + strand, within Dsui_0815 at 827.561 kb on - strand at 827.596 kb on + strand at 827.620 kb on - strand at 827.623 kb on + strand at 827.623 kb on + strand at 827.630 kb on + strand at 827.631 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM remove 824,794 + -0.4 824,825 + -2.3 824,825 + -0.7 824,825 + -0.9 824,830 + +1.1 824,844 - -2.2 824,867 + -0.5 824,867 - -1.3 824,870 - -0.4 824,875 - -0.6 824,877 + -0.6 824,880 - -0.7 824,885 - -1.0 824,890 + -0.5 824,943 + -1.1 824,943 + -0.7 824,948 + -0.7 824,948 + -0.7 824,951 - -0.8 825,021 + Dsui_0813 0.18 -0.8 825,021 + Dsui_0813 0.18 -0.5 825,080 + Dsui_0813 0.24 -1.6 825,083 - Dsui_0813 0.24 -0.7 825,088 - Dsui_0813 0.25 -1.9 825,118 + Dsui_0813 0.28 -0.4 825,127 - Dsui_0813 0.29 -1.0 825,143 - Dsui_0813 0.31 -1.3 825,147 + Dsui_0813 0.32 -0.8 825,204 + Dsui_0813 0.38 -1.1 825,212 - Dsui_0813 0.39 -0.8 825,214 + Dsui_0813 0.39 -0.2 825,268 + Dsui_0813 0.45 -0.5 825,292 + Dsui_0813 0.48 -1.1 825,292 + Dsui_0813 0.48 -0.8 825,300 - Dsui_0813 0.49 -3.3 825,300 - Dsui_0813 0.49 -0.5 825,307 + Dsui_0813 0.49 -1.0 825,314 + Dsui_0813 0.50 -0.9 825,314 + Dsui_0813 0.50 -0.9 825,314 + Dsui_0813 0.50 -0.7 825,314 + Dsui_0813 0.50 -1.0 825,314 + Dsui_0813 0.50 -0.7 825,315 - Dsui_0813 0.50 -0.6 825,322 - Dsui_0813 0.51 -2.8 825,322 - Dsui_0813 0.51 -0.6 825,322 - Dsui_0813 0.51 -2.1 825,322 - Dsui_0813 0.51 -0.3 825,322 - Dsui_0813 0.51 -1.2 825,322 - Dsui_0813 0.51 -0.3 825,322 - Dsui_0813 0.51 -0.5 825,334 - Dsui_0813 0.52 -1.6 825,349 + Dsui_0813 0.54 -0.5 825,364 + Dsui_0813 0.56 -0.4 825,396 - Dsui_0813 0.59 -1.3 825,412 - Dsui_0813 0.61 +0.2 825,431 + Dsui_0813 0.63 -1.8 825,436 - Dsui_0813 0.64 -3.3 825,438 + Dsui_0813 0.64 -0.4 825,455 + Dsui_0813 0.66 -1.2 825,525 - Dsui_0813 0.73 -1.8 825,569 - Dsui_0813 0.78 -1.7 825,658 - Dsui_0813 0.88 -2.0 825,758 + -0.9 825,818 + -1.0 825,832 - -1.2 825,871 - Dsui_0814 0.12 -1.3 825,910 + Dsui_0814 0.16 -0.8 825,918 - Dsui_0814 0.17 -3.1 825,920 + Dsui_0814 0.17 -0.7 825,920 + Dsui_0814 0.17 +0.1 825,928 - Dsui_0814 0.18 -0.9 825,929 - Dsui_0814 0.18 -1.4 825,986 - Dsui_0814 0.24 -0.6 825,998 + Dsui_0814 0.25 -0.9 826,006 - Dsui_0814 0.26 -1.0 826,079 - Dsui_0814 0.34 -2.6 826,085 + Dsui_0814 0.35 -2.2 826,109 - Dsui_0814 0.37 -2.3 826,125 + Dsui_0814 0.39 -0.5 826,135 + Dsui_0814 0.40 -0.3 826,140 + Dsui_0814 0.41 -1.2 826,192 + Dsui_0814 0.46 -0.6 826,237 + Dsui_0814 0.51 -1.2 826,242 + Dsui_0814 0.52 -1.7 826,245 - Dsui_0814 0.52 -2.0 826,249 + Dsui_0814 0.52 -1.0 826,252 - Dsui_0814 0.53 -2.6 826,254 + Dsui_0814 0.53 -0.7 826,369 + Dsui_0814 0.65 -1.0 826,379 + Dsui_0814 0.67 -1.3 826,422 + Dsui_0814 0.71 -0.8 826,461 + Dsui_0814 0.75 -1.0 826,471 + Dsui_0814 0.77 -0.7 826,471 - Dsui_0814 0.77 -0.4 826,473 + Dsui_0814 0.77 -1.0 826,491 - Dsui_0814 0.79 -1.1 826,546 + Dsui_0814 0.85 -0.8 826,591 + Dsui_0814 0.90 -0.9 826,593 - Dsui_0814 0.90 -1.1 826,606 + -0.6 826,614 - -1.0 826,633 + -0.7 826,641 - -0.8 826,663 + -1.0 826,699 + -0.8 826,699 + -0.7 826,707 - -0.1 826,707 - -1.4 826,707 - -0.9 826,753 - -0.8 826,854 + -3.1 826,854 + -0.2 826,862 - -0.9 826,926 + Dsui_0815 0.17 -3.0 826,928 - Dsui_0815 0.18 -2.2 826,952 - Dsui_0815 0.21 -1.9 826,952 - Dsui_0815 0.21 -2.0 826,952 - Dsui_0815 0.21 -2.0 826,957 - Dsui_0815 0.21 -1.6 826,976 - Dsui_0815 0.23 -3.1 826,980 + Dsui_0815 0.24 -4.6 827,015 - Dsui_0815 0.28 -1.9 827,135 - Dsui_0815 0.42 -2.5 827,155 - Dsui_0815 0.45 -0.9 827,232 - Dsui_0815 0.54 -1.7 827,259 - Dsui_0815 0.57 -3.1 827,308 - Dsui_0815 0.63 -2.4 827,328 + Dsui_0815 0.65 -1.6 827,352 + Dsui_0815 0.68 -3.7 827,352 + Dsui_0815 0.68 -1.0 827,363 + Dsui_0815 0.69 -0.6 827,363 + Dsui_0815 0.69 -3.0 827,409 - Dsui_0815 0.75 -2.1 827,413 - Dsui_0815 0.75 -2.6 827,419 - Dsui_0815 0.76 -2.9 827,450 + Dsui_0815 0.79 -6.0 827,461 + Dsui_0815 0.81 -1.5 827,507 + Dsui_0815 0.86 -0.8 827,508 + Dsui_0815 0.86 -2.5 827,508 + Dsui_0815 0.86 -4.1 827,531 + Dsui_0815 0.89 -3.4 827,531 + Dsui_0815 0.89 -3.7 827,561 - -2.0 827,596 + -1.5 827,620 - -3.9 827,623 + -2.1 827,623 + -2.3 827,630 + -0.2 827,631 - -1.4
Or see this region's nucleotide sequence