Strain Fitness in Dechlorosoma suillum PS around Dsui_0795

Experiment: ALP with copper (II) chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0794 and Dsui_0795 are separated by 20 nucleotidesDsui_0795 and Dsui_0796 are separated by 76 nucleotidesDsui_0796 and Dsui_0797 are separated by 9 nucleotidesDsui_0797 and Dsui_0798 are separated by 163 nucleotides Dsui_0794: Dsui_0794 - putative protease with the C-terminal PDZ domain, at 800,796 to 802,634 _0794 Dsui_0795: Dsui_0795 - putative enzyme of the cupin superfamily, at 802,655 to 803,020 _0795 Dsui_0796: Dsui_0796 - hypothetical protein, at 803,097 to 803,474 _0796 Dsui_0797: Dsui_0797 - protein of unknown function (DUF1840), at 803,484 to 803,816 _0797 Dsui_0798: Dsui_0798 - carbonic anhydrase, at 803,980 to 804,636 _0798 Position (kb) 802 803 804Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 801.762 kb on - strand, within Dsui_0794at 801.773 kb on + strandat 801.774 kb on + strand, within Dsui_0794at 801.781 kb on + strand, within Dsui_0794at 801.796 kb on - strand, within Dsui_0794at 801.849 kb on + strand, within Dsui_0794at 801.859 kb on + strand, within Dsui_0794at 801.909 kb on + strand, within Dsui_0794at 801.909 kb on + strand, within Dsui_0794at 801.924 kb on + strand, within Dsui_0794at 801.929 kb on - strand, within Dsui_0794at 802.080 kb on + strand, within Dsui_0794at 802.081 kb on + strand, within Dsui_0794at 802.098 kb on - strandat 802.151 kb on + strand, within Dsui_0794at 802.280 kb on + strand, within Dsui_0794at 802.283 kb on - strand, within Dsui_0794at 802.317 kb on + strandat 802.322 kb on + strand, within Dsui_0794at 802.391 kb on + strand, within Dsui_0794at 802.431 kb on + strandat 802.434 kb on - strand, within Dsui_0794at 802.486 kb on + strandat 802.520 kb on + strandat 802.528 kb on - strandat 802.539 kb on - strandat 802.571 kb on - strandat 802.712 kb on - strand, within Dsui_0795at 802.727 kb on - strand, within Dsui_0795at 802.737 kb on - strand, within Dsui_0795at 802.758 kb on + strand, within Dsui_0795at 802.758 kb on + strand, within Dsui_0795at 802.758 kb on + strand, within Dsui_0795at 802.766 kb on - strand, within Dsui_0795at 802.766 kb on - strand, within Dsui_0795at 802.817 kb on - strandat 802.896 kb on + strand, within Dsui_0795at 802.959 kb on + strand, within Dsui_0795at 802.967 kb on - strand, within Dsui_0795at 803.011 kb on + strandat 803.096 kb on - strandat 803.129 kb on + strandat 803.129 kb on + strandat 803.129 kb on + strandat 803.133 kb on - strandat 803.142 kb on + strand, within Dsui_0796at 803.314 kb on + strand, within Dsui_0796at 803.314 kb on + strand, within Dsui_0796at 803.322 kb on - strand, within Dsui_0796at 803.334 kb on + strand, within Dsui_0796at 803.478 kb on - strandat 803.478 kb on - strandat 803.483 kb on - strandat 803.518 kb on - strandat 803.573 kb on - strand, within Dsui_0797at 803.622 kb on - strand, within Dsui_0797at 803.681 kb on + strand, within Dsui_0797at 803.857 kb on - strandat 803.876 kb on - strandat 803.889 kb on - strandat 803.913 kb on + strandat 803.921 kb on - strandat 803.923 kb on + strandat 803.923 kb on + strandat 803.931 kb on + strandat 804.007 kb on + strandat 804.012 kb on + strandat 804.012 kb on + strandat 804.017 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM
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801,762 - Dsui_0794 0.53 -0.2
801,773 + -0.8
801,774 + Dsui_0794 0.53 -0.2
801,781 + Dsui_0794 0.54 +0.0
801,796 - Dsui_0794 0.54 -0.2
801,849 + Dsui_0794 0.57 -1.0
801,859 + Dsui_0794 0.58 +0.6
801,909 + Dsui_0794 0.61 -1.4
801,909 + Dsui_0794 0.61 -2.1
801,924 + Dsui_0794 0.61 +0.3
801,929 - Dsui_0794 0.62 -2.7
802,080 + Dsui_0794 0.70 -1.5
802,081 + Dsui_0794 0.70 -1.2
802,098 - +0.8
802,151 + Dsui_0794 0.74 -2.7
802,280 + Dsui_0794 0.81 -3.0
802,283 - Dsui_0794 0.81 -2.7
802,317 + +0.8
802,322 + Dsui_0794 0.83 -2.0
802,391 + Dsui_0794 0.87 +0.2
802,431 + +0.8
802,434 - Dsui_0794 0.89 -2.0
802,486 + -4.8
802,520 + -3.0
802,528 - -0.2
802,539 - -0.9
802,571 - -1.2
802,712 - Dsui_0795 0.16 -2.0
802,727 - Dsui_0795 0.20 -1.8
802,737 - Dsui_0795 0.22 -1.2
802,758 + Dsui_0795 0.28 -3.4
802,758 + Dsui_0795 0.28 -3.5
802,758 + Dsui_0795 0.28 -1.9
802,766 - Dsui_0795 0.30 -0.8
802,766 - Dsui_0795 0.30 -2.5
802,817 - +0.8
802,896 + Dsui_0795 0.66 -0.8
802,959 + Dsui_0795 0.83 -1.2
802,967 - Dsui_0795 0.85 +0.8
803,011 + -1.2
803,096 - -1.2
803,129 + -0.8
803,129 + -0.3
803,129 + -0.4
803,133 - -2.0
803,142 + Dsui_0796 0.12 +0.4
803,314 + Dsui_0796 0.57 -0.7
803,314 + Dsui_0796 0.57 -0.4
803,322 - Dsui_0796 0.60 -2.2
803,334 + Dsui_0796 0.63 -0.6
803,478 - -1.8
803,478 - -4.1
803,483 - -0.8
803,518 - +0.8
803,573 - Dsui_0797 0.27 -1.7
803,622 - Dsui_0797 0.41 -1.8
803,681 + Dsui_0797 0.59 -0.8
803,857 - -2.5
803,876 - +0.9
803,889 - -1.8
803,913 + -0.2
803,921 - -0.2
803,923 + +0.8
803,923 + +0.8
803,931 + -2.0
804,007 + -2.4
804,012 + -1.6
804,012 + -2.7
804,017 + -0.8

Or see this region's nucleotide sequence