Experiment: ALP with copper (II) chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0777 and Dsui_0778 overlap by 4 nucleotides Dsui_0778 and Dsui_0779 are separated by 249 nucleotides Dsui_0779 and Dsui_0780 are separated by 286 nucleotides
Dsui_0777: Dsui_0777 - response regulator containing a CheY-like receiver domain and an HD-GYP domain, at 781,577 to 782,740
_0777
Dsui_0778: Dsui_0778 - small protein A (tmRNA-binding), at 782,737 to 783,222
_0778
Dsui_0779: Dsui_0779 - 5-methyltetrahydrofolate--homocysteine methyltransferase, at 783,472 to 787,152
_0779
Dsui_0780: Dsui_0780 - acetoacetyl-CoA reductase, at 787,439 to 788,176
_0780
Position (kb) 783
784
785
786
787
788 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 782.496 kb on - strand, within Dsui_0777 at 782.575 kb on - strand, within Dsui_0777 at 782.674 kb on + strand at 782.737 kb on + strand at 782.777 kb on - strand at 782.917 kb on - strand at 782.962 kb on - strand, within Dsui_0778 at 782.989 kb on - strand, within Dsui_0778 at 782.989 kb on - strand, within Dsui_0778 at 782.999 kb on - strand, within Dsui_0778 at 783.035 kb on + strand, within Dsui_0778 at 783.055 kb on + strand, within Dsui_0778 at 783.216 kb on + strand at 783.306 kb on + strand at 783.314 kb on - strand at 783.364 kb on + strand at 787.112 kb on + strand at 787.154 kb on - strand at 787.191 kb on - strand at 787.246 kb on - strand at 787.344 kb on + strand at 787.353 kb on - strand at 787.379 kb on - strand at 787.397 kb on - strand at 787.403 kb on + strand at 787.443 kb on + strand at 787.510 kb on - strand at 787.518 kb on + strand, within Dsui_0780 at 787.526 kb on - strand, within Dsui_0780 at 787.526 kb on - strand, within Dsui_0780 at 787.583 kb on + strand, within Dsui_0780 at 787.583 kb on + strand, within Dsui_0780 at 787.583 kb on + strand, within Dsui_0780 at 787.588 kb on + strand at 787.588 kb on + strand, within Dsui_0780 at 787.588 kb on + strand, within Dsui_0780 at 787.588 kb on + strand, within Dsui_0780 at 787.596 kb on - strand, within Dsui_0780 at 787.604 kb on - strand, within Dsui_0780 at 787.606 kb on - strand, within Dsui_0780 at 787.665 kb on - strand, within Dsui_0780 at 787.665 kb on - strand, within Dsui_0780 at 787.665 kb on - strand, within Dsui_0780 at 787.743 kb on - strand, within Dsui_0780 at 787.769 kb on + strand, within Dsui_0780 at 787.769 kb on + strand, within Dsui_0780 at 787.779 kb on - strand, within Dsui_0780 at 787.810 kb on + strand, within Dsui_0780 at 787.870 kb on - strand, within Dsui_0780 at 787.883 kb on - strand, within Dsui_0780 at 787.894 kb on - strand, within Dsui_0780 at 787.944 kb on - strand, within Dsui_0780 at 787.966 kb on + strand, within Dsui_0780 at 787.983 kb on - strand, within Dsui_0780 at 788.019 kb on + strand, within Dsui_0780 at 788.069 kb on + strand, within Dsui_0780 at 788.096 kb on - strand, within Dsui_0780 at 788.144 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM remove 782,496 - Dsui_0777 0.79 -2.8 782,575 - Dsui_0777 0.86 -0.2 782,674 + +0.8 782,737 + -0.2 782,777 - +0.8 782,917 - +0.8 782,962 - Dsui_0778 0.46 -2.2 782,989 - Dsui_0778 0.52 -0.8 782,989 - Dsui_0778 0.52 -1.8 782,999 - Dsui_0778 0.54 -2.0 783,035 + Dsui_0778 0.61 -3.0 783,055 + Dsui_0778 0.65 -3.4 783,216 + -2.2 783,306 + -0.5 783,314 - -1.8 783,364 + -2.3 787,112 + -2.7 787,154 - -2.0 787,191 - -3.2 787,246 - -2.4 787,344 + -1.6 787,353 - -0.2 787,379 - -3.1 787,397 - +0.8 787,403 + -2.2 787,443 + -2.8 787,510 - -0.9 787,518 + Dsui_0780 0.11 -2.0 787,526 - Dsui_0780 0.12 -1.2 787,526 - Dsui_0780 0.12 -0.8 787,583 + Dsui_0780 0.20 -3.7 787,583 + Dsui_0780 0.20 -2.0 787,583 + Dsui_0780 0.20 -1.5 787,588 + -0.2 787,588 + Dsui_0780 0.20 -1.1 787,588 + Dsui_0780 0.20 -1.1 787,588 + Dsui_0780 0.20 -0.8 787,596 - Dsui_0780 0.21 -2.5 787,604 - Dsui_0780 0.22 -1.5 787,606 - Dsui_0780 0.23 -0.8 787,665 - Dsui_0780 0.31 +0.8 787,665 - Dsui_0780 0.31 -0.8 787,665 - Dsui_0780 0.31 -0.2 787,743 - Dsui_0780 0.41 +0.8 787,769 + Dsui_0780 0.45 -1.9 787,769 + Dsui_0780 0.45 -2.2 787,779 - Dsui_0780 0.46 -0.2 787,810 + Dsui_0780 0.50 +0.2 787,870 - Dsui_0780 0.58 +0.8 787,883 - Dsui_0780 0.60 -2.2 787,894 - Dsui_0780 0.62 +0.8 787,944 - Dsui_0780 0.68 +0.8 787,966 + Dsui_0780 0.71 +0.8 787,983 - Dsui_0780 0.74 +0.8 788,019 + Dsui_0780 0.79 -0.8 788,069 + Dsui_0780 0.85 +0.5 788,096 - Dsui_0780 0.89 -0.8 788,144 - -0.2
Or see this region's nucleotide sequence